Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13341 | 3' | -55.4 | NC_003409.1 | + | 113452 | 0.67 | 0.875973 |
Target: 5'- -cGGGcGGUCCaacaGGUGCCUggcccagGAGGGc -3' miRNA: 3'- gaUCCaUCAGGga--CCACGGGa------UUCCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 130744 | 0.67 | 0.86859 |
Target: 5'- -cAGGUAcucUCCCUGG-GCCCagcuGGGc -3' miRNA: 3'- gaUCCAUc--AGGGACCaCGGGauu-CCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 119055 | 0.68 | 0.80229 |
Target: 5'- -gGGGUAGUCCgCUGGUauuCCCagcUGAGGu -3' miRNA: 3'- gaUCCAUCAGG-GACCAc--GGG---AUUCCc -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 131543 | 0.71 | 0.675357 |
Target: 5'- --cGGUAGUCCCUGGccGCCCgcAGc- -3' miRNA: 3'- gauCCAUCAGGGACCa-CGGGauUCcc -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 121345 | 1.1 | 0.00246 |
Target: 5'- cCUAGGUAGUCCCUGGUGCCCUAAGGGu -3' miRNA: 3'- -GAUCCAUCAGGGACCACGGGAUUCCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 23924 | 0.68 | 0.80229 |
Target: 5'- -gGGGUAGUCCgCUGGUauuCCCagcUGAGGu -3' miRNA: 3'- gaUCCAUCAGG-GACCAc--GGG---AUUCCc -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 104820 | 0.68 | 0.810328 |
Target: 5'- uUGGGUggAGUCCCugcgcaaUGGUGCCucaCUAggcgcGGGGg -3' miRNA: 3'- gAUCCA--UCAGGG-------ACCACGG---GAU-----UCCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 103427 | 0.68 | 0.836955 |
Target: 5'- gCUAcGGUGGccUCCCUGGUGgCCUGuucgauGGu -3' miRNA: 3'- -GAU-CCAUC--AGGGACCACgGGAUu-----CCc -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 131487 | 0.67 | 0.883134 |
Target: 5'- cCUGGGUcGUCuggagcaucaCCUGG-GCagCCUAAGGGc -3' miRNA: 3'- -GAUCCAuCAG----------GGACCaCG--GGAUUCCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 7371 | 0.66 | 0.903237 |
Target: 5'- uCUGGGagcaUGG-CCugcagaCUGGUGCCCUGguuGGGa -3' miRNA: 3'- -GAUCC----AUCaGG------GACCACGGGAUu--CCC- -5' |
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13341 | 3' | -55.4 | NC_003409.1 | + | 82427 | 0.66 | 0.903237 |
Target: 5'- -gGGGUGGgauUCCCUGG-GCCgacuGGGu -3' miRNA: 3'- gaUCCAUC---AGGGACCaCGGgauuCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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