Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13343 | 3' | -54.1 | NC_003409.1 | + | 15417 | 0.66 | 0.938456 |
Target: 5'- cAUgACAagCUGAcGGGCGGaCGGCGuCGg -3' miRNA: 3'- -UAgUGUaaGACU-CCUGCC-GUCGCuGC- -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 41983 | 0.66 | 0.938456 |
Target: 5'- -cUACGUUgUGAGcGAUGGCA-CGGCGc -3' miRNA: 3'- uaGUGUAAgACUC-CUGCCGUcGCUGC- -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 126036 | 0.66 | 0.93343 |
Target: 5'- --gACGag--GAGGACGGgGGCGAUGg -3' miRNA: 3'- uagUGUaagaCUCCUGCCgUCGCUGC- -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 91931 | 0.68 | 0.845746 |
Target: 5'- aGUCAUAUUCaGGcGACGGCcGGCGGCc -3' miRNA: 3'- -UAGUGUAAGaCUcCUGCCG-UCGCUGc -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 10118 | 0.69 | 0.811256 |
Target: 5'- gGUCAUGggggaugCgGAGGGgGGCGGCGAUGa -3' miRNA: 3'- -UAGUGUaa-----GaCUCCUgCCGUCGCUGC- -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 110893 | 0.7 | 0.79295 |
Target: 5'- cUCugGguUUC-GGGGuCGGUAGCGACGg -3' miRNA: 3'- uAGugU--AAGaCUCCuGCCGUCGCUGC- -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 31210 | 0.71 | 0.734673 |
Target: 5'- --uGCAgag-GAGGACGGCGGUGGCc -3' miRNA: 3'- uagUGUaagaCUCCUGCCGUCGCUGc -5' |
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13343 | 3' | -54.1 | NC_003409.1 | + | 121625 | 1.06 | 0.005343 |
Target: 5'- uAUCACAUUCUGAGGACGGCAGCGACGu -3' miRNA: 3'- -UAGUGUAAGACUCCUGCCGUCGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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