miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13343 3' -54.1 NC_003409.1 + 15417 0.66 0.938456
Target:  5'- cAUgACAagCUGAcGGGCGGaCGGCGuCGg -3'
miRNA:   3'- -UAgUGUaaGACU-CCUGCC-GUCGCuGC- -5'
13343 3' -54.1 NC_003409.1 + 41983 0.66 0.938456
Target:  5'- -cUACGUUgUGAGcGAUGGCA-CGGCGc -3'
miRNA:   3'- uaGUGUAAgACUC-CUGCCGUcGCUGC- -5'
13343 3' -54.1 NC_003409.1 + 126036 0.66 0.93343
Target:  5'- --gACGag--GAGGACGGgGGCGAUGg -3'
miRNA:   3'- uagUGUaagaCUCCUGCCgUCGCUGC- -5'
13343 3' -54.1 NC_003409.1 + 91931 0.68 0.845746
Target:  5'- aGUCAUAUUCaGGcGACGGCcGGCGGCc -3'
miRNA:   3'- -UAGUGUAAGaCUcCUGCCG-UCGCUGc -5'
13343 3' -54.1 NC_003409.1 + 10118 0.69 0.811256
Target:  5'- gGUCAUGggggaugCgGAGGGgGGCGGCGAUGa -3'
miRNA:   3'- -UAGUGUaa-----GaCUCCUgCCGUCGCUGC- -5'
13343 3' -54.1 NC_003409.1 + 110893 0.7 0.79295
Target:  5'- cUCugGguUUC-GGGGuCGGUAGCGACGg -3'
miRNA:   3'- uAGugU--AAGaCUCCuGCCGUCGCUGC- -5'
13343 3' -54.1 NC_003409.1 + 31210 0.71 0.734673
Target:  5'- --uGCAgag-GAGGACGGCGGUGGCc -3'
miRNA:   3'- uagUGUaagaCUCCUGCCGUCGCUGc -5'
13343 3' -54.1 NC_003409.1 + 121625 1.06 0.005343
Target:  5'- uAUCACAUUCUGAGGACGGCAGCGACGu -3'
miRNA:   3'- -UAGUGUAAGACUCCUGCCGUCGCUGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.