miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13343 5' -50.3 NC_003409.1 + 130221 0.66 0.99504
Target:  5'- -cCAGCGUCGCcuuaGCAGAGUGUc- -3'
miRNA:   3'- caGUUGCAGCGccagUGUCUUACAcu -5'
13343 5' -50.3 NC_003409.1 + 120207 0.66 0.994226
Target:  5'- uUCGACGUCcagGCGGcuggcaCACGGGccGUGAg -3'
miRNA:   3'- cAGUUGCAG---CGCCa-----GUGUCUuaCACU- -5'
13343 5' -50.3 NC_003409.1 + 5437 0.66 0.993307
Target:  5'- -gCAGCGUCGgugucaaagaGGUCACAGAAcauggacugGUGGa -3'
miRNA:   3'- caGUUGCAGCg---------CCAGUGUCUUa--------CACU- -5'
13343 5' -50.3 NC_003409.1 + 20193 0.66 0.992275
Target:  5'- uUUAGCGU-GCGGUCAgAGug-GUGGg -3'
miRNA:   3'- cAGUUGCAgCGCCAGUgUCuuaCACU- -5'
13343 5' -50.3 NC_003409.1 + 52505 0.66 0.992275
Target:  5'- -gCGGCGUaaacugugGCGG-CACGGAcgGUGAc -3'
miRNA:   3'- caGUUGCAg-------CGCCaGUGUCUuaCACU- -5'
13343 5' -50.3 NC_003409.1 + 85881 0.67 0.989834
Target:  5'- -cCAGCGgaucCGCGGUgAUAGGAUGg-- -3'
miRNA:   3'- caGUUGCa---GCGCCAgUGUCUUACacu -5'
13343 5' -50.3 NC_003409.1 + 121380 0.67 0.989834
Target:  5'- -gCGGCGUUGUGGcCACGGGcgGUu- -3'
miRNA:   3'- caGUUGCAGCGCCaGUGUCUuaCAcu -5'
13343 5' -50.3 NC_003409.1 + 114084 0.67 0.988255
Target:  5'- -aCGGCGUCGCuuGGUCggcACAGAAagcacuucaggguUGUGGa -3'
miRNA:   3'- caGUUGCAGCG--CCAG---UGUCUU-------------ACACU- -5'
13343 5' -50.3 NC_003409.1 + 121452 0.67 0.986827
Target:  5'- cGUUAgacacACGUCGCugccGUCcuCAGAAUGUGAu -3'
miRNA:   3'- -CAGU-----UGCAGCGc---CAGu-GUCUUACACU- -5'
13343 5' -50.3 NC_003409.1 + 115303 0.68 0.97634
Target:  5'- -cCAugGUCGaGGUC-CAGcAGUGUGGg -3'
miRNA:   3'- caGUugCAGCgCCAGuGUC-UUACACU- -5'
13343 5' -50.3 NC_003409.1 + 34170 0.69 0.963969
Target:  5'- aGUCAGCG--GUGGUCGaggcgaccgucguCAGggUGUGAg -3'
miRNA:   3'- -CAGUUGCagCGCCAGU-------------GUCuuACACU- -5'
13343 5' -50.3 NC_003409.1 + 121589 1.1 0.008577
Target:  5'- cGUCAACGUCGCGGUCACAGAAUGUGAc -3'
miRNA:   3'- -CAGUUGCAGCGCCAGUGUCUUACACU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.