Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13343 | 5' | -50.3 | NC_003409.1 | + | 130221 | 0.66 | 0.99504 |
Target: 5'- -cCAGCGUCGCcuuaGCAGAGUGUc- -3' miRNA: 3'- caGUUGCAGCGccagUGUCUUACAcu -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 120207 | 0.66 | 0.994226 |
Target: 5'- uUCGACGUCcagGCGGcuggcaCACGGGccGUGAg -3' miRNA: 3'- cAGUUGCAG---CGCCa-----GUGUCUuaCACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 5437 | 0.66 | 0.993307 |
Target: 5'- -gCAGCGUCGgugucaaagaGGUCACAGAAcauggacugGUGGa -3' miRNA: 3'- caGUUGCAGCg---------CCAGUGUCUUa--------CACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 20193 | 0.66 | 0.992275 |
Target: 5'- uUUAGCGU-GCGGUCAgAGug-GUGGg -3' miRNA: 3'- cAGUUGCAgCGCCAGUgUCuuaCACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 52505 | 0.66 | 0.992275 |
Target: 5'- -gCGGCGUaaacugugGCGG-CACGGAcgGUGAc -3' miRNA: 3'- caGUUGCAg-------CGCCaGUGUCUuaCACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 85881 | 0.67 | 0.989834 |
Target: 5'- -cCAGCGgaucCGCGGUgAUAGGAUGg-- -3' miRNA: 3'- caGUUGCa---GCGCCAgUGUCUUACacu -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 121380 | 0.67 | 0.989834 |
Target: 5'- -gCGGCGUUGUGGcCACGGGcgGUu- -3' miRNA: 3'- caGUUGCAGCGCCaGUGUCUuaCAcu -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 114084 | 0.67 | 0.988255 |
Target: 5'- -aCGGCGUCGCuuGGUCggcACAGAAagcacuucaggguUGUGGa -3' miRNA: 3'- caGUUGCAGCG--CCAG---UGUCUU-------------ACACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 121452 | 0.67 | 0.986827 |
Target: 5'- cGUUAgacacACGUCGCugccGUCcuCAGAAUGUGAu -3' miRNA: 3'- -CAGU-----UGCAGCGc---CAGu-GUCUUACACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 115303 | 0.68 | 0.97634 |
Target: 5'- -cCAugGUCGaGGUC-CAGcAGUGUGGg -3' miRNA: 3'- caGUugCAGCgCCAGuGUC-UUACACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 34170 | 0.69 | 0.963969 |
Target: 5'- aGUCAGCG--GUGGUCGaggcgaccgucguCAGggUGUGAg -3' miRNA: 3'- -CAGUUGCagCGCCAGU-------------GUCuuACACU- -5' |
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13343 | 5' | -50.3 | NC_003409.1 | + | 121589 | 1.1 | 0.008577 |
Target: 5'- cGUCAACGUCGCGGUCACAGAAUGUGAc -3' miRNA: 3'- -CAGUUGCAGCGCCAGUGUCUUACACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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