miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13344 3' -52.3 NC_003409.1 + 3044 0.67 0.947447
Target:  5'- -gGCCAAGUGCAuuGGCUauuuuagGGGCg -3'
miRNA:   3'- cgCGGUUCACGU--UUGGgauua--CCCGg -5'
13344 3' -52.3 NC_003409.1 + 4384 0.68 0.927564
Target:  5'- cGUGCC-AGUGUcuGCaCUgGAUGGGUCa -3'
miRNA:   3'- -CGCGGuUCACGuuUG-GGaUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 6647 0.68 0.942858
Target:  5'- aUGCCGAuGUGUcAGCCCUAgccAUGGaCCu -3'
miRNA:   3'- cGCGGUU-CACGuUUGGGAU---UACCcGG- -5'
13344 3' -52.3 NC_003409.1 + 24070 0.66 0.975526
Target:  5'- cGCGCCccagaacauGGGUgGCuAACgCCUAcAUGGGCa -3'
miRNA:   3'- -CGCGG---------UUCA-CGuUUG-GGAU-UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 27691 0.68 0.927564
Target:  5'- uGCGCCGGcGUcGCuguGGCgCCUuuGUGGGCUu -3'
miRNA:   3'- -CGCGGUU-CA-CGu--UUG-GGAu-UACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 38324 0.66 0.973919
Target:  5'- aGCGCCAaggguGGUGUGGuuauACCCgacaguggugaacGUGGGCa -3'
miRNA:   3'- -CGCGGU-----UCACGUU----UGGGau-----------UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 40554 0.71 0.817939
Target:  5'- gGCGCC-AGUGCAGGCCUaguuugcgAAUGGcGUg -3'
miRNA:   3'- -CGCGGuUCACGUUUGGGa-------UUACC-CGg -5'
13344 3' -52.3 NC_003409.1 + 41648 0.67 0.955878
Target:  5'- cCGCCAGGagacGCGGugUCUcGUGGGUg -3'
miRNA:   3'- cGCGGUUCa---CGUUugGGAuUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 46150 0.66 0.975264
Target:  5'- -aGCCAAGUGCGGugUgcagggaagcgauCUcGUGGGUa -3'
miRNA:   3'- cgCGGUUCACGUUugG-------------GAuUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 51961 0.71 0.835447
Target:  5'- cGCGCCAGccucUGCAGuUCCUccaaagGGUGGGCUa -3'
miRNA:   3'- -CGCGGUUc---ACGUUuGGGA------UUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 55891 0.69 0.916086
Target:  5'- cGCGCUucAGUGCAccgugGGCCCUGAc-GGCa -3'
miRNA:   3'- -CGCGGu-UCACGU-----UUGGGAUUacCCGg -5'
13344 3' -52.3 NC_003409.1 + 59260 0.67 0.962988
Target:  5'- aCGCCGAGUGCGGcauacauGCCuCUGgcgacGUcGGcGCCg -3'
miRNA:   3'- cGCGGUUCACGUU-------UGG-GAU-----UA-CC-CGG- -5'
13344 3' -52.3 NC_003409.1 + 60849 0.69 0.896285
Target:  5'- uGUGCCAcGUuccgguggacgccGCGGGCCCgguUAGUGGGaCCu -3'
miRNA:   3'- -CGCGGUuCA-------------CGUUUGGG---AUUACCC-GG- -5'
13344 3' -52.3 NC_003409.1 + 70968 0.73 0.731285
Target:  5'- aCGCCAGGUuCu--CCUUGGUGGGUCa -3'
miRNA:   3'- cGCGGUUCAcGuuuGGGAUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 73034 0.66 0.972805
Target:  5'- cCGCCGGGcUGCu--CUCUGAgcaguccaGGGCCc -3'
miRNA:   3'- cGCGGUUC-ACGuuuGGGAUUa-------CCCGG- -5'
13344 3' -52.3 NC_003409.1 + 73581 0.66 0.978043
Target:  5'- aCGCCGGGU-CuguACCC-GAUGGGUUa -3'
miRNA:   3'- cGCGGUUCAcGuu-UGGGaUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 77252 0.66 0.972805
Target:  5'- cGCGcCCAGGgGCAGACCCaAAaaGGaCCu -3'
miRNA:   3'- -CGC-GGUUCaCGUUUGGGaUUacCC-GG- -5'
13344 3' -52.3 NC_003409.1 + 77964 0.68 0.927564
Target:  5'- cGCGUgAAGUGUAuuCC--GGUGGGCa -3'
miRNA:   3'- -CGCGgUUCACGUuuGGgaUUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 85235 0.7 0.860201
Target:  5'- -gGCUAGGUgGCuGACauaUUAGUGGGCCu -3'
miRNA:   3'- cgCGGUUCA-CGuUUGg--GAUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 87199 0.66 0.969871
Target:  5'- cGCGCCAcccugcGUGUgggaaAGACCCUGGuuUGGagcGCCu -3'
miRNA:   3'- -CGCGGUu-----CACG-----UUUGGGAUU--ACC---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.