miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13344 3' -52.3 NC_003409.1 + 93029 0.67 0.955878
Target:  5'- uGUGUgAAacUGCGAGCCCUca-GGGCCc -3'
miRNA:   3'- -CGCGgUUc-ACGUUUGGGAuuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 92855 0.67 0.955878
Target:  5'- uGUGUgAAacUGCGAGCCCUca-GGGCCc -3'
miRNA:   3'- -CGCGgUUc-ACGUUUGGGAuuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 41648 0.67 0.955878
Target:  5'- cCGCCAGGagacGCGGugUCUcGUGGGUg -3'
miRNA:   3'- cGCGGUUCa---CGUUugGGAuUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 3044 0.67 0.947447
Target:  5'- -gGCCAAGUGCAuuGGCUauuuuagGGGCg -3'
miRNA:   3'- cgCGGUUCACGU--UUGGgauua--CCCGg -5'
13344 3' -52.3 NC_003409.1 + 87560 0.68 0.942858
Target:  5'- gGCGCCAgaGGUGC--ACCCU----GGCUg -3'
miRNA:   3'- -CGCGGU--UCACGuuUGGGAuuacCCGG- -5'
13344 3' -52.3 NC_003409.1 + 6647 0.68 0.942858
Target:  5'- aUGCCGAuGUGUcAGCCCUAgccAUGGaCCu -3'
miRNA:   3'- cGCGGUU-CACGuUUGGGAU---UACCcGG- -5'
13344 3' -52.3 NC_003409.1 + 117807 0.68 0.942858
Target:  5'- cGCGCCcguUGCAacucguguccugAAUgCUAcgGGGCCa -3'
miRNA:   3'- -CGCGGuucACGU------------UUGgGAUuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 109499 0.68 0.942858
Target:  5'- cGCGuCCGGGgcgGCGugcuccGGCUCccGUGGGCCc -3'
miRNA:   3'- -CGC-GGUUCa--CGU------UUGGGauUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 127963 0.68 0.938015
Target:  5'- aCGCCGAGUGCcu-CUCgg--GGGUCc -3'
miRNA:   3'- cGCGGUUCACGuuuGGGauuaCCCGG- -5'
13344 3' -52.3 NC_003409.1 + 123758 0.68 0.938015
Target:  5'- gGCGCCAugGGUGCugguGugUgUGggGGGCa -3'
miRNA:   3'- -CGCGGU--UCACGu---UugGgAUuaCCCGg -5'
13344 3' -52.3 NC_003409.1 + 131108 0.68 0.932918
Target:  5'- gGCuuCCAGcUGCugguGGCCCUGgguguaGUGGGCCg -3'
miRNA:   3'- -CGc-GGUUcACGu---UUGGGAU------UACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 116423 0.68 0.932918
Target:  5'- aGCGUaCAAGUGUGAcgUCUGugagggGUGGGCCa -3'
miRNA:   3'- -CGCG-GUUCACGUUugGGAU------UACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 27691 0.68 0.927564
Target:  5'- uGCGCCGGcGUcGCuguGGCgCCUuuGUGGGCUu -3'
miRNA:   3'- -CGCGGUU-CA-CGu--UUG-GGAu-UACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 4384 0.68 0.927564
Target:  5'- cGUGCC-AGUGUcuGCaCUgGAUGGGUCa -3'
miRNA:   3'- -CGCGGuUCACGuuUG-GGaUUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 91715 0.68 0.927564
Target:  5'- -gGCCAcuccCAAGCCCacAUGGGCCu -3'
miRNA:   3'- cgCGGUucacGUUUGGGauUACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 77964 0.68 0.927564
Target:  5'- cGCGUgAAGUGUAuuCC--GGUGGGCa -3'
miRNA:   3'- -CGCGgUUCACGUuuGGgaUUACCCGg -5'
13344 3' -52.3 NC_003409.1 + 94428 0.69 0.916086
Target:  5'- aGUGCCuGGGUGCuguCCCggguuAUGGGUg -3'
miRNA:   3'- -CGCGG-UUCACGuuuGGGau---UACCCGg -5'
13344 3' -52.3 NC_003409.1 + 108307 0.69 0.916086
Target:  5'- uGCGCUggGUuuccucgcGCGAugCUUuucucUGGGCCu -3'
miRNA:   3'- -CGCGGuuCA--------CGUUugGGAuu---ACCCGG- -5'
13344 3' -52.3 NC_003409.1 + 55891 0.69 0.916086
Target:  5'- cGCGCUucAGUGCAccgugGGCCCUGAc-GGCa -3'
miRNA:   3'- -CGCGGu-UCACGU-----UUGGGAUUacCCGg -5'
13344 3' -52.3 NC_003409.1 + 60849 0.69 0.896285
Target:  5'- uGUGCCAcGUuccgguggacgccGCGGGCCCgguUAGUGGGaCCu -3'
miRNA:   3'- -CGCGGUuCA-------------CGUUUGGG---AUUACCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.