miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13344 5' -54.5 NC_003409.1 + 63635 0.66 0.939063
Target:  5'- gCGGUCagcagauUCACACUCCCGGgACc-- -3'
miRNA:   3'- gGCCGGgu-----AGUGUGAGGGUUgUGaua -5'
13344 5' -54.5 NC_003409.1 + 118469 0.66 0.934094
Target:  5'- cCCGGCgCggCGCAC-CCCAGC-CUc- -3'
miRNA:   3'- -GGCCGgGuaGUGUGaGGGUUGuGAua -5'
13344 5' -54.5 NC_003409.1 + 134131 0.66 0.934094
Target:  5'- aCCGGCCCAcaACAUUgUCAACAg--- -3'
miRNA:   3'- -GGCCGGGUagUGUGAgGGUUGUgaua -5'
13344 5' -54.5 NC_003409.1 + 110777 0.66 0.928876
Target:  5'- cCCGcacuGCCCGUUAuauCACcCCCAGCACa-- -3'
miRNA:   3'- -GGC----CGGGUAGU---GUGaGGGUUGUGaua -5'
13344 5' -54.5 NC_003409.1 + 119947 0.66 0.923409
Target:  5'- gCCGGCgCCuggCACGCggCCAACAUa-- -3'
miRNA:   3'- -GGCCG-GGua-GUGUGagGGUUGUGaua -5'
13344 5' -54.5 NC_003409.1 + 26696 0.66 0.917692
Target:  5'- uUCGuGCCCGUC-CAC-CCCcGCGCUc- -3'
miRNA:   3'- -GGC-CGGGUAGuGUGaGGGuUGUGAua -5'
13344 5' -54.5 NC_003409.1 + 28123 0.66 0.911728
Target:  5'- uUCGGCUCGccCACGgUCCCAccuagcggcguGCACUGg -3'
miRNA:   3'- -GGCCGGGUa-GUGUgAGGGU-----------UGUGAUa -5'
13344 5' -54.5 NC_003409.1 + 66574 0.67 0.905516
Target:  5'- gCUGGCCC-UgGCACg-CCGACACUu- -3'
miRNA:   3'- -GGCCGGGuAgUGUGagGGUUGUGAua -5'
13344 5' -54.5 NC_003409.1 + 62016 0.67 0.905516
Target:  5'- aCGaGCCCuaaACAugcCUCCCGACACUu- -3'
miRNA:   3'- gGC-CGGGuagUGU---GAGGGUUGUGAua -5'
13344 5' -54.5 NC_003409.1 + 94804 0.67 0.905516
Target:  5'- -gGGCguauCCGUCGC-CUCCCGacgaGCGCUAUu -3'
miRNA:   3'- ggCCG----GGUAGUGuGAGGGU----UGUGAUA- -5'
13344 5' -54.5 NC_003409.1 + 120050 0.67 0.899059
Target:  5'- aUCGGCCaagucagcgCAgcgcgCGCACUCCCu-CACUAa -3'
miRNA:   3'- -GGCCGG---------GUa----GUGUGAGGGuuGUGAUa -5'
13344 5' -54.5 NC_003409.1 + 21717 0.67 0.885425
Target:  5'- uCCGGUCUAUgCcaggACGCUCCCAGCGu--- -3'
miRNA:   3'- -GGCCGGGUA-G----UGUGAGGGUUGUgaua -5'
13344 5' -54.5 NC_003409.1 + 108948 0.67 0.885425
Target:  5'- gCCGGCuCCGggACagugGCUCCUGACACUu- -3'
miRNA:   3'- -GGCCG-GGUagUG----UGAGGGUUGUGAua -5'
13344 5' -54.5 NC_003409.1 + 130932 0.67 0.878256
Target:  5'- aCCGGCCCAcUACACccagggccaCCAGCAgCUGg -3'
miRNA:   3'- -GGCCGGGUaGUGUGag-------GGUUGU-GAUa -5'
13344 5' -54.5 NC_003409.1 + 90115 0.68 0.870857
Target:  5'- gUGGCCCAUCAUcccauaaaaAUUCgCCAACAaCUGg -3'
miRNA:   3'- gGCCGGGUAGUG---------UGAG-GGUUGU-GAUa -5'
13344 5' -54.5 NC_003409.1 + 108132 0.68 0.863235
Target:  5'- -aGGCCCAgagaaaagcaUCGCGCgaggaaaCCCAGCGCa-- -3'
miRNA:   3'- ggCCGGGU----------AGUGUGa------GGGUUGUGaua -5'
13344 5' -54.5 NC_003409.1 + 110992 0.68 0.855395
Target:  5'- -aGGCCgG-CGCcCUCCCGACACg-- -3'
miRNA:   3'- ggCCGGgUaGUGuGAGGGUUGUGaua -5'
13344 5' -54.5 NC_003409.1 + 86864 0.68 0.855395
Target:  5'- cCCGGgCaCA-CACACUCCCGcCGCUc- -3'
miRNA:   3'- -GGCCgG-GUaGUGUGAGGGUuGUGAua -5'
13344 5' -54.5 NC_003409.1 + 105606 0.69 0.785734
Target:  5'- aCCGGCCCA--GCuCUgCCAGCAgUGUa -3'
miRNA:   3'- -GGCCGGGUagUGuGAgGGUUGUgAUA- -5'
13344 5' -54.5 NC_003409.1 + 131047 0.7 0.756989
Target:  5'- aCGGaCCCA-CAcCAC-CCCAGCGCUGg -3'
miRNA:   3'- gGCC-GGGUaGU-GUGaGGGUUGUGAUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.