Results 61 - 80 of 103 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 3' | -57 | NC_003409.1 | + | 125480 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125450 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125420 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 124804 | 0.75 | 0.320411 |
Target: 5'- gAGCAGGAGUUAgAGgAGCAGGAGgUg -3' miRNA: 3'- gUCGUCCUCGGUgUUgUCGUCCUCgG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 124612 | 0.76 | 0.301601 |
Target: 5'- gAGCAGGAGUUagaggagguggaagaGCAggaGCAGCAGGAGUUa -3' miRNA: 3'- gUCGUCCUCGG---------------UGU---UGUCGUCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 124768 | 0.76 | 0.285005 |
Target: 5'- gAGCAGGAGgUggaagaGCAAgAGCAGGAGCa -3' miRNA: 3'- gUCGUCCUCgG------UGUUgUCGUCCUCGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 73491 | 0.76 | 0.285005 |
Target: 5'- gGGCAGGGGCgcucagaAUAACGGCGGGuuuuGCCa -3' miRNA: 3'- gUCGUCCUCGg------UGUUGUCGUCCu---CGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125138 | 0.77 | 0.271732 |
Target: 5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125102 | 0.77 | 0.271732 |
Target: 5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 133539 | 0.78 | 0.229177 |
Target: 5'- aCAGCAGGccgagauGCUGCAGgAGCGGGAGUCc -3' miRNA: 3'- -GUCGUCCu------CGGUGUUgUCGUCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 124702 | 0.78 | 0.234893 |
Target: 5'- gAGCAGGAGCaggaGgAGCAGgAGGAGCa -3' miRNA: 3'- gUCGUCCUCGg---UgUUGUCgUCCUCGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24351 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125179 | 0.79 | 0.192392 |
Target: 5'- gAGCAGGAGCagcaggaugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- gUCGUCCUCGg---------UGUUGUCGUCCU---CGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 125045 | 0.79 | 0.18758 |
Target: 5'- gCAGgAGGAGCaggaGCAGCAGgAGGAGCa -3' miRNA: 3'- -GUCgUCCUCGg---UGUUGUCgUCCUCGg -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24271 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24551 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24511 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24471 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24431 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
|||||||
13345 | 3' | -57 | NC_003409.1 | + | 24311 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home