Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 3' | -57 | NC_003409.1 | + | 125390 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125270 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125300 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125330 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125360 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 73989 | 0.74 | 0.400745 |
Target: 5'- aCGGCGGcGGCUACGGCGGCAGaGGCg -3' miRNA: 3'- -GUCGUCcUCGGUGUUGUCGUCcUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125480 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125420 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125450 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125510 | 0.74 | 0.375335 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 74365 | 0.72 | 0.502547 |
Target: 5'- uGGCGGGGGUaACGACaguAGCGGGGGUUg -3' miRNA: 3'- gUCGUCCUCGgUGUUG---UCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 88374 | 0.72 | 0.46409 |
Target: 5'- aGGCAGGGGCUGCAGCAccuGCucccccuaAGGcGCCa -3' miRNA: 3'- gUCGUCCUCGGUGUUGU---CG--------UCCuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 125240 | 0.72 | 0.483134 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAu-- -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCUcgg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 126001 | 0.72 | 0.502547 |
Target: 5'- gAGCAuccaaAGUUcacaACAGCAGCAGGAGCCa -3' miRNA: 3'- gUCGUcc---UCGG----UGUUGUCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 60948 | 0.71 | 0.542331 |
Target: 5'- uGGCcucAGGGGCCucguuCGACuGGCAGGAGUa -3' miRNA: 3'- gUCG---UCCUCGGu----GUUG-UCGUCCUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 31374 | 0.71 | 0.546371 |
Target: 5'- -cGCAGG-GCCACcgccguccuccucuGCAGCAGcAGCCg -3' miRNA: 3'- guCGUCCuCGGUGu-------------UGUCGUCcUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 35234 | 0.7 | 0.614084 |
Target: 5'- gAGUacuugAGGAGCCG--GCGGUAGGuGGCCa -3' miRNA: 3'- gUCG-----UCCUCGGUguUGUCGUCC-UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 85076 | 0.7 | 0.623412 |
Target: 5'- aCGGCAGGcugugguGGCUGCGauaACGGaguGGAGCCg -3' miRNA: 3'- -GUCGUCC-------UCGGUGU---UGUCgu-CCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 72845 | 0.7 | 0.603733 |
Target: 5'- aCAGaaaAGGAuuucugacaGCCGCAuGCAGCGGGgugAGCCu -3' miRNA: 3'- -GUCg--UCCU---------CGGUGU-UGUCGUCC---UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 88673 | 0.7 | 0.572839 |
Target: 5'- aGGCGGGAuaucGCUGcCGGCAgGCAGGGGCg -3' miRNA: 3'- gUCGUCCU----CGGU-GUUGU-CGUCCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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