Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 3' | -57 | NC_003409.1 | + | 118868 | 0.7 | 0.624449 |
Target: 5'- aCGGCuGGAGUgGCgGugGGCGGG-GCCc -3' miRNA: 3'- -GUCGuCCUCGgUG-UugUCGUCCuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 119058 | 0.69 | 0.655548 |
Target: 5'- uCAGUagauGGGGGCCAgGAUuaUAGGGGCCc -3' miRNA: 3'- -GUCG----UCCUCGGUgUUGucGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 30614 | 0.69 | 0.655548 |
Target: 5'- uGGCAGcGGUCGCGAUgAGCAGGAGa- -3' miRNA: 3'- gUCGUCcUCGGUGUUG-UCGUCCUCgg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 30969 | 0.69 | 0.665887 |
Target: 5'- aGGCGGGGGUgGguuCAGCGGguGGugcGCCa -3' miRNA: 3'- gUCGUCCUCGgU---GUUGUCguCCu--CGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 130947 | 0.69 | 0.665887 |
Target: 5'- --cCAGG-GCCAcCAGCAGCuGGaAGCCc -3' miRNA: 3'- gucGUCCuCGGU-GUUGUCGuCC-UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 21769 | 0.68 | 0.686472 |
Target: 5'- aGGCAGucAGCacaGCGACgAGCAGGAuGCCc -3' miRNA: 3'- gUCGUCc-UCGg--UGUUG-UCGUCCU-CGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 84314 | 0.68 | 0.6967 |
Target: 5'- aAGCGGGAGCUauGCGAUAcGCuGGAcGCa -3' miRNA: 3'- gUCGUCCUCGG--UGUUGU-CGuCCU-CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 103623 | 0.68 | 0.6967 |
Target: 5'- -uGCAGGG---ACAACGGCAGGGGgCg -3' miRNA: 3'- guCGUCCUcggUGUUGUCGUCCUCgG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 131523 | 0.68 | 0.6967 |
Target: 5'- cCAGUGGGuguGCCAC-GCAGCGGuAGUCc -3' miRNA: 3'- -GUCGUCCu--CGGUGuUGUCGUCcUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 76909 | 0.68 | 0.705858 |
Target: 5'- aGGCgacgaagAGGAGCCucgACAACacgGGCGGGGGUUg -3' miRNA: 3'- gUCG-------UCCUCGG---UGUUG---UCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 116862 | 0.68 | 0.716979 |
Target: 5'- aGGcCGGGAGCCuuggGCAACGGUGGGAu-- -3' miRNA: 3'- gUC-GUCCUCGG----UGUUGUCGUCCUcgg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 13856 | 0.68 | 0.716979 |
Target: 5'- gCAGuCAGGu-CCugGACcucauacuGCGGGAGCCg -3' miRNA: 3'- -GUC-GUCCucGGugUUGu-------CGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 61864 | 0.68 | 0.727012 |
Target: 5'- -uGCAGGcAGuCCAgguCGACAGCGGGgacggggggugAGCCu -3' miRNA: 3'- guCGUCC-UC-GGU---GUUGUCGUCC-----------UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 46193 | 0.68 | 0.736961 |
Target: 5'- gUAGUuauGGcGGCCACGugGGCcGGGGCg -3' miRNA: 3'- -GUCGu--CC-UCGGUGUugUCGuCCUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 94733 | 0.67 | 0.756568 |
Target: 5'- uCAGCAGGccgaucgaGGCCGuCGAUAuCAGGguGGCCa -3' miRNA: 3'- -GUCGUCC--------UCGGU-GUUGUcGUCC--UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 27118 | 0.67 | 0.756568 |
Target: 5'- uGGCAGGcAGCCGCuGCAuCAGcuGCCu -3' miRNA: 3'- gUCGUCC-UCGGUGuUGUcGUCcuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 17895 | 0.67 | 0.766207 |
Target: 5'- gAGCGGGAGUUACGaagucucacugaAgGGCGGGgucgcgggucggGGCCg -3' miRNA: 3'- gUCGUCCUCGGUGU------------UgUCGUCC------------UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 54273 | 0.67 | 0.766207 |
Target: 5'- uGGCuGGAGCCcuucCAACAGCAGcuAGUa -3' miRNA: 3'- gUCGuCCUCGGu---GUUGUCGUCc-UCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 26696 | 0.67 | 0.775723 |
Target: 5'- aGGCGGGAua-GCGACAGUAGG-GCg -3' miRNA: 3'- gUCGUCCUcggUGUUGUCGUCCuCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 113160 | 0.67 | 0.775723 |
Target: 5'- uUAGcCAGG-GUaGCGACGGUGGGGGCUu -3' miRNA: 3'- -GUC-GUCCuCGgUGUUGUCGUCCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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