miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 84314 0.68 0.6967
Target:  5'- aAGCGGGAGCUauGCGAUAcGCuGGAcGCa -3'
miRNA:   3'- gUCGUCCUCGG--UGUUGU-CGuCCU-CGg -5'
13345 3' -57 NC_003409.1 + 85076 0.7 0.623412
Target:  5'- aCGGCAGGcugugguGGCUGCGauaACGGaguGGAGCCg -3'
miRNA:   3'- -GUCGUCC-------UCGGUGU---UGUCgu-CCUCGG- -5'
13345 3' -57 NC_003409.1 + 88374 0.72 0.46409
Target:  5'- aGGCAGGGGCUGCAGCAccuGCucccccuaAGGcGCCa -3'
miRNA:   3'- gUCGUCCUCGGUGUUGU---CG--------UCCuCGG- -5'
13345 3' -57 NC_003409.1 + 88673 0.7 0.572839
Target:  5'- aGGCGGGAuaucGCUGcCGGCAgGCAGGGGCg -3'
miRNA:   3'- gUCGUCCU----CGGU-GUUGU-CGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 94733 0.67 0.756568
Target:  5'- uCAGCAGGccgaucgaGGCCGuCGAUAuCAGGguGGCCa -3'
miRNA:   3'- -GUCGUCC--------UCGGU-GUUGUcGUCC--UCGG- -5'
13345 3' -57 NC_003409.1 + 101142 0.66 0.821145
Target:  5'- aGGCcuGAGUgGgGGaGGCGGGAGCCu -3'
miRNA:   3'- gUCGucCUCGgUgUUgUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 103623 0.68 0.6967
Target:  5'- -uGCAGGG---ACAACGGCAGGGGgCg -3'
miRNA:   3'- guCGUCCUcggUGUUGUCGUCCUCgG- -5'
13345 3' -57 NC_003409.1 + 107412 0.67 0.794352
Target:  5'- gCGGUGGGAGCCuguuGCAGgAGGguGGCg -3'
miRNA:   3'- -GUCGUCCUCGGugu-UGUCgUCC--UCGg -5'
13345 3' -57 NC_003409.1 + 108694 0.65 0.843908
Target:  5'- gGGaCAGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCc -3'
miRNA:   3'- gUC-GUCCU-CGGUGUUGUCG--------------UCCU---CGG- -5'
13345 3' -57 NC_003409.1 + 109112 0.67 0.794352
Target:  5'- -uGuCAGGAGCCACu---GUcccGGAGCCg -3'
miRNA:   3'- guC-GUCCUCGGUGuuguCGu--CCUCGG- -5'
13345 3' -57 NC_003409.1 + 109911 0.67 0.785108
Target:  5'- gCAGUaAGGGGCCGCA--AGguGGA-CCa -3'
miRNA:   3'- -GUCG-UCCUCGGUGUugUCguCCUcGG- -5'
13345 3' -57 NC_003409.1 + 113160 0.67 0.775723
Target:  5'- uUAGcCAGG-GUaGCGACGGUGGGGGCUu -3'
miRNA:   3'- -GUC-GUCCuCGgUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 113957 0.66 0.821145
Target:  5'- uGGCGGauucGGCCGCAcaGGguGGuGCCg -3'
miRNA:   3'- gUCGUCc---UCGGUGUugUCguCCuCGG- -5'
13345 3' -57 NC_003409.1 + 116862 0.68 0.716979
Target:  5'- aGGcCGGGAGCCuuggGCAACGGUGGGAu-- -3'
miRNA:   3'- gUC-GUCCUCGG----UGUUGUCGUCCUcgg -5'
13345 3' -57 NC_003409.1 + 118868 0.7 0.624449
Target:  5'- aCGGCuGGAGUgGCgGugGGCGGG-GCCc -3'
miRNA:   3'- -GUCGuCCUCGgUG-UugUCGUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 119058 0.69 0.655548
Target:  5'- uCAGUagauGGGGGCCAgGAUuaUAGGGGCCc -3'
miRNA:   3'- -GUCG----UCCUCGGUgUUGucGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124555 0.83 0.102927
Target:  5'- gAGCAGGAGCaGCAgggggugaACAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGgUGU--------UGUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124612 0.76 0.301601
Target:  5'- gAGCAGGAGUUagaggagguggaagaGCAggaGCAGCAGGAGUUa -3'
miRNA:   3'- gUCGUCCUCGG---------------UGU---UGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124645 0.66 0.829734
Target:  5'- gAGCAGGAGUUAgAGgAGguGGAagaGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCguCCU---CGg -5'
13345 3' -57 NC_003409.1 + 124702 0.78 0.234893
Target:  5'- gAGCAGGAGCaggaGgAGCAGgAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUUGUCgUCCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.