miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 125542 0.89 0.044313
Target:  5'- aCAGCAgcGGAGCCACAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGU--CCUCGGUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125510 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125480 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125450 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125420 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125390 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125360 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125330 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125300 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125270 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125240 0.72 0.483134
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAu-- -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCUcgg -5'
13345 3' -57 NC_003409.1 + 125215 0.8 0.165084
Target:  5'- gAGCAGGAGCagcaGgAugAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUugUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125179 0.79 0.192392
Target:  5'- gAGCAGGAGCagcaggaugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- gUCGUCCUCGg---------UGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125138 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125102 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125045 0.79 0.18758
Target:  5'- gCAGgAGGAGCaggaGCAGCAGgAGGAGCa -3'
miRNA:   3'- -GUCgUCCUCGg---UGUUGUCgUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125014 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124972 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124930 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124888 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.