miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 4390 0.67 0.782307
Target:  5'- uGGuCAGGuagagcacagaguuGGCCGCaAACAGCuGGGcGCCa -3'
miRNA:   3'- gUC-GUCC--------------UCGGUG-UUGUCGuCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 109112 0.67 0.794352
Target:  5'- -uGuCAGGAGCCACu---GUcccGGAGCCg -3'
miRNA:   3'- guC-GUCCUCGGUGuuguCGu--CCUCGG- -5'
13345 3' -57 NC_003409.1 + 37457 0.66 0.812379
Target:  5'- uCGGCGGaGGuCCACAACucuGuCAGG-GCCg -3'
miRNA:   3'- -GUCGUCcUC-GGUGUUGu--C-GUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 40523 0.66 0.812379
Target:  5'- cCGGCGGuGGCgGCcAUGGUGGGAGUCu -3'
miRNA:   3'- -GUCGUCcUCGgUGuUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 88374 0.72 0.46409
Target:  5'- aGGCAGGGGCUGCAGCAccuGCucccccuaAGGcGCCa -3'
miRNA:   3'- gUCGUCCUCGGUGUUGU---CG--------UCCuCGG- -5'
13345 3' -57 NC_003409.1 + 125270 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125300 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 124930 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124888 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 124846 0.81 0.137664
Target:  5'- gAGCAGGAGUUAgAGgAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125215 0.8 0.165084
Target:  5'- gAGCAGGAGCagcaGgAugAGCAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUugUCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125045 0.79 0.18758
Target:  5'- gCAGgAGGAGCaggaGCAGCAGgAGGAGCa -3'
miRNA:   3'- -GUCgUCCUCGg---UGUUGUCgUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125179 0.79 0.192392
Target:  5'- gAGCAGGAGCagcaggaugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- gUCGUCCUCGg---------UGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 133539 0.78 0.229177
Target:  5'- aCAGCAGGccgagauGCUGCAGgAGCGGGAGUCc -3'
miRNA:   3'- -GUCGUCCu------CGGUGUUgUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 124702 0.78 0.234893
Target:  5'- gAGCAGGAGCaggaGgAGCAGgAGGAGCa -3'
miRNA:   3'- gUCGUCCUCGg---UgUUGUCgUCCUCGg -5'
13345 3' -57 NC_003409.1 + 125138 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125102 0.77 0.271732
Target:  5'- gCAGCAGGAugaGCaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCU---CGgUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125390 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125360 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125330 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.