Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 3' | -57 | NC_003409.1 | + | 31374 | 0.71 | 0.546371 |
Target: 5'- -cGCAGG-GCCACcgccguccuccucuGCAGCAGcAGCCg -3' miRNA: 3'- guCGUCCuCGGUGu-------------UGUCGUCcUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 85076 | 0.7 | 0.623412 |
Target: 5'- aCGGCAGGcugugguGGCUGCGauaACGGaguGGAGCCg -3' miRNA: 3'- -GUCGUCC-------UCGGUGU---UGUCgu-CCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 107412 | 0.67 | 0.794352 |
Target: 5'- gCGGUGGGAGCCuguuGCAGgAGGguGGCg -3' miRNA: 3'- -GUCGUCCUCGGugu-UGUCgUCC--UCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 48165 | 0.66 | 0.812379 |
Target: 5'- gGGCAGGGcaCCACGAUgaAGCuuucGAGCCa -3' miRNA: 3'- gUCGUCCUc-GGUGUUG--UCGuc--CUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 37457 | 0.66 | 0.812379 |
Target: 5'- uCGGCGGaGGuCCACAACucuGuCAGG-GCCg -3' miRNA: 3'- -GUCGUCcUC-GGUGUUGu--C-GUCCuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 40523 | 0.66 | 0.812379 |
Target: 5'- cCGGCGGuGGCgGCcAUGGUGGGAGUCu -3' miRNA: 3'- -GUCGUCcUCGgUGuUGUCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 113957 | 0.66 | 0.821145 |
Target: 5'- uGGCGGauucGGCCGCAcaGGguGGuGCCg -3' miRNA: 3'- gUCGUCc---UCGGUGUugUCguCCuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 124645 | 0.66 | 0.829734 |
Target: 5'- gAGCAGGAGUUAgAGgAGguGGAagaGCa -3' miRNA: 3'- gUCGUCCUCGGUgUUgUCguCCU---CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 128260 | 0.66 | 0.836473 |
Target: 5'- uCAGCAcGGGGCgugauggCGCAggugaggGCAGCA-GAGCCc -3' miRNA: 3'- -GUCGU-CCUCG-------GUGU-------UGUCGUcCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 46761 | 0.66 | 0.838139 |
Target: 5'- uGGCGGGGGCCc---CAGCA--AGCCu -3' miRNA: 3'- gUCGUCCUCGGuguuGUCGUccUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 109112 | 0.67 | 0.794352 |
Target: 5'- -uGuCAGGAGCCACu---GUcccGGAGCCg -3' miRNA: 3'- guC-GUCCUCGGUGuuguCGu--CCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 109911 | 0.67 | 0.785108 |
Target: 5'- gCAGUaAGGGGCCGCA--AGguGGA-CCa -3' miRNA: 3'- -GUCG-UCCUCGGUGUugUCguCCUcGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 119058 | 0.69 | 0.655548 |
Target: 5'- uCAGUagauGGGGGCCAgGAUuaUAGGGGCCc -3' miRNA: 3'- -GUCG----UCCUCGGUgUUGucGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 84314 | 0.68 | 0.6967 |
Target: 5'- aAGCGGGAGCUauGCGAUAcGCuGGAcGCa -3' miRNA: 3'- gUCGUCCUCGG--UGUUGU-CGuCCU-CGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 76909 | 0.68 | 0.705858 |
Target: 5'- aGGCgacgaagAGGAGCCucgACAACacgGGCGGGGGUUg -3' miRNA: 3'- gUCG-------UCCUCGG---UGUUG---UCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 116862 | 0.68 | 0.716979 |
Target: 5'- aGGcCGGGAGCCuuggGCAACGGUGGGAu-- -3' miRNA: 3'- gUC-GUCCUCGG----UGUUGUCGUCCUcgg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 46193 | 0.68 | 0.736961 |
Target: 5'- gUAGUuauGGcGGCCACGugGGCcGGGGCg -3' miRNA: 3'- -GUCGu--CC-UCGGUGUugUCGuCCUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 54273 | 0.67 | 0.766207 |
Target: 5'- uGGCuGGAGCCcuucCAACAGCAGcuAGUa -3' miRNA: 3'- gUCGuCCUCGGu---GUUGUCGUCc-UCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 26696 | 0.67 | 0.775723 |
Target: 5'- aGGCGGGAua-GCGACAGUAGG-GCg -3' miRNA: 3'- gUCGUCCUcggUGUUGUCGUCCuCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 4390 | 0.67 | 0.782307 |
Target: 5'- uGGuCAGGuagagcacagaguuGGCCGCaAACAGCuGGGcGCCa -3' miRNA: 3'- gUC-GUCC--------------UCGGUG-UUGUCGuCCU-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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