miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 40523 0.66 0.812379
Target:  5'- cCGGCGGuGGCgGCcAUGGUGGGAGUCu -3'
miRNA:   3'- -GUCGUCcUCGgUGuUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 113957 0.66 0.821145
Target:  5'- uGGCGGauucGGCCGCAcaGGguGGuGCCg -3'
miRNA:   3'- gUCGUCc---UCGGUGUugUCguCCuCGG- -5'
13345 3' -57 NC_003409.1 + 124645 0.66 0.829734
Target:  5'- gAGCAGGAGUUAgAGgAGguGGAagaGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCguCCU---CGg -5'
13345 3' -57 NC_003409.1 + 128260 0.66 0.836473
Target:  5'- uCAGCAcGGGGCgugauggCGCAggugaggGCAGCA-GAGCCc -3'
miRNA:   3'- -GUCGU-CCUCG-------GUGU-------UGUCGUcCUCGG- -5'
13345 3' -57 NC_003409.1 + 46761 0.66 0.838139
Target:  5'- uGGCGGGGGCCc---CAGCA--AGCCu -3'
miRNA:   3'- gUCGUCCUCGGuguuGUCGUccUCGG- -5'
13345 3' -57 NC_003409.1 + 46193 0.68 0.736961
Target:  5'- gUAGUuauGGcGGCCACGugGGCcGGGGCg -3'
miRNA:   3'- -GUCGu--CC-UCGGUGUugUCGuCCUCGg -5'
13345 3' -57 NC_003409.1 + 116862 0.68 0.716979
Target:  5'- aGGcCGGGAGCCuuggGCAACGGUGGGAu-- -3'
miRNA:   3'- gUC-GUCCUCGG----UGUUGUCGUCCUcgg -5'
13345 3' -57 NC_003409.1 + 125330 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125300 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 125270 0.74 0.375335
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAugaGCa -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCU---CGg -5'
13345 3' -57 NC_003409.1 + 88374 0.72 0.46409
Target:  5'- aGGCAGGGGCUGCAGCAccuGCucccccuaAGGcGCCa -3'
miRNA:   3'- gUCGUCCUCGGUGUUGU---CG--------UCCuCGG- -5'
13345 3' -57 NC_003409.1 + 125240 0.72 0.483134
Target:  5'- gCAGCAGGAugaGCAGCAGCAGGAu-- -3'
miRNA:   3'- -GUCGUCCUcggUGUUGUCGUCCUcgg -5'
13345 3' -57 NC_003409.1 + 126001 0.72 0.502547
Target:  5'- gAGCAuccaaAGUUcacaACAGCAGCAGGAGCCa -3'
miRNA:   3'- gUCGUcc---UCGG----UGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 74365 0.72 0.502547
Target:  5'- uGGCGGGGGUaACGACaguAGCGGGGGUUg -3'
miRNA:   3'- gUCGUCCUCGgUGUUG---UCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 60948 0.71 0.542331
Target:  5'- uGGCcucAGGGGCCucguuCGACuGGCAGGAGUa -3'
miRNA:   3'- gUCG---UCCUCGGu----GUUG-UCGUCCUCGg -5'
13345 3' -57 NC_003409.1 + 31374 0.71 0.546371
Target:  5'- -cGCAGG-GCCACcgccguccuccucuGCAGCAGcAGCCg -3'
miRNA:   3'- guCGUCCuCGGUGu-------------UGUCGUCcUCGG- -5'
13345 3' -57 NC_003409.1 + 85076 0.7 0.623412
Target:  5'- aCGGCAGGcugugguGGCUGCGauaACGGaguGGAGCCg -3'
miRNA:   3'- -GUCGUCC-------UCGGUGU---UGUCgu-CCUCGG- -5'
13345 3' -57 NC_003409.1 + 119058 0.69 0.655548
Target:  5'- uCAGUagauGGGGGCCAgGAUuaUAGGGGCCc -3'
miRNA:   3'- -GUCG----UCCUCGGUgUUGucGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 84314 0.68 0.6967
Target:  5'- aAGCGGGAGCUauGCGAUAcGCuGGAcGCa -3'
miRNA:   3'- gUCGUCCUCGG--UGUUGU-CGuCCU-CGg -5'
13345 3' -57 NC_003409.1 + 76909 0.68 0.705858
Target:  5'- aGGCgacgaagAGGAGCCucgACAACacgGGCGGGGGUUg -3'
miRNA:   3'- gUCG-------UCCUCGG---UGUUG---UCGUCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.