Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13345 | 3' | -57 | NC_003409.1 | + | 125240 | 0.72 | 0.483134 |
Target: 5'- gCAGCAGGAugaGCAGCAGCAGGAu-- -3' miRNA: 3'- -GUCGUCCUcggUGUUGUCGUCCUcgg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 119058 | 0.69 | 0.655548 |
Target: 5'- uCAGUagauGGGGGCCAgGAUuaUAGGGGCCc -3' miRNA: 3'- -GUCG----UCCUCGGUgUUGucGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 85076 | 0.7 | 0.623412 |
Target: 5'- aCGGCAGGcugugguGGCUGCGauaACGGaguGGAGCCg -3' miRNA: 3'- -GUCGUCC-------UCGGUGU---UGUCgu-CCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 31374 | 0.71 | 0.546371 |
Target: 5'- -cGCAGG-GCCACcgccguccuccucuGCAGCAGcAGCCg -3' miRNA: 3'- guCGUCCuCGGUGu-------------UGUCGUCcUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 60948 | 0.71 | 0.542331 |
Target: 5'- uGGCcucAGGGGCCucguuCGACuGGCAGGAGUa -3' miRNA: 3'- gUCG---UCCUCGGu----GUUG-UCGUCCUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 74365 | 0.72 | 0.502547 |
Target: 5'- uGGCGGGGGUaACGACaguAGCGGGGGUUg -3' miRNA: 3'- gUCGUCCUCGgUGUUG---UCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 126001 | 0.72 | 0.502547 |
Target: 5'- gAGCAuccaaAGUUcacaACAGCAGCAGGAGCCa -3' miRNA: 3'- gUCGUcc---UCGG----UGUUGUCGUCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 118868 | 0.7 | 0.624449 |
Target: 5'- aCGGCuGGAGUgGCgGugGGCGGG-GCCc -3' miRNA: 3'- -GUCGuCCUCGgUG-UugUCGUCCuCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 35234 | 0.7 | 0.614084 |
Target: 5'- gAGUacuugAGGAGCCG--GCGGUAGGuGGCCa -3' miRNA: 3'- gUCG-----UCCUCGGUguUGUCGUCC-UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 72845 | 0.7 | 0.603733 |
Target: 5'- aCAGaaaAGGAuuucugacaGCCGCAuGCAGCGGGgugAGCCu -3' miRNA: 3'- -GUCg--UCCU---------CGGUGU-UGUCGUCC---UCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 88673 | 0.7 | 0.572839 |
Target: 5'- aGGCGGGAuaucGCUGcCGGCAgGCAGGGGCg -3' miRNA: 3'- gUCGUCCU----CGGU-GUUGU-CGUCCUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 73989 | 0.74 | 0.400745 |
Target: 5'- aCGGCGGcGGCUACGGCGGCAGaGGCg -3' miRNA: 3'- -GUCGUCcUCGGUGUUGUCGUCcUCGg -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24551 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24511 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24471 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24431 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24391 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24351 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 24311 | 0.79 | 0.18758 |
Target: 5'- gCAGCaccccAGGAGCCcCGGCAGCaccccAGGAGCCc -3' miRNA: 3'- -GUCG-----UCCUCGGuGUUGUCG-----UCCUCGG- -5' |
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13345 | 3' | -57 | NC_003409.1 | + | 108694 | 0.65 | 0.843908 |
Target: 5'- gGGaCAGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCc -3' miRNA: 3'- gUC-GUCCU-CGGUGUUGUCG--------------UCCU---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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