miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 109911 0.67 0.785108
Target:  5'- gCAGUaAGGGGCCGCA--AGguGGA-CCa -3'
miRNA:   3'- -GUCG-UCCUCGGUGUugUCguCCUcGG- -5'
13345 3' -57 NC_003409.1 + 11020 0.67 0.785108
Target:  5'- gCGGC-GGAGCCcCAACA-CGGGAGg- -3'
miRNA:   3'- -GUCGuCCUCGGuGUUGUcGUCCUCgg -5'
13345 3' -57 NC_003409.1 + 4390 0.67 0.782307
Target:  5'- uGGuCAGGuagagcacagaguuGGCCGCaAACAGCuGGGcGCCa -3'
miRNA:   3'- gUC-GUCC--------------UCGGUG-UUGUCGuCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 26696 0.67 0.775723
Target:  5'- aGGCGGGAua-GCGACAGUAGG-GCg -3'
miRNA:   3'- gUCGUCCUcggUGUUGUCGUCCuCGg -5'
13345 3' -57 NC_003409.1 + 113160 0.67 0.775723
Target:  5'- uUAGcCAGG-GUaGCGACGGUGGGGGCUu -3'
miRNA:   3'- -GUC-GUCCuCGgUGUUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 54273 0.67 0.766207
Target:  5'- uGGCuGGAGCCcuucCAACAGCAGcuAGUa -3'
miRNA:   3'- gUCGuCCUCGGu---GUUGUCGUCc-UCGg -5'
13345 3' -57 NC_003409.1 + 17895 0.67 0.766207
Target:  5'- gAGCGGGAGUUACGaagucucacugaAgGGCGGGgucgcgggucggGGCCg -3'
miRNA:   3'- gUCGUCCUCGGUGU------------UgUCGUCC------------UCGG- -5'
13345 3' -57 NC_003409.1 + 94733 0.67 0.756568
Target:  5'- uCAGCAGGccgaucgaGGCCGuCGAUAuCAGGguGGCCa -3'
miRNA:   3'- -GUCGUCC--------UCGGU-GUUGUcGUCC--UCGG- -5'
13345 3' -57 NC_003409.1 + 27118 0.67 0.756568
Target:  5'- uGGCAGGcAGCCGCuGCAuCAGcuGCCu -3'
miRNA:   3'- gUCGUCC-UCGGUGuUGUcGUCcuCGG- -5'
13345 3' -57 NC_003409.1 + 46193 0.68 0.736961
Target:  5'- gUAGUuauGGcGGCCACGugGGCcGGGGCg -3'
miRNA:   3'- -GUCGu--CC-UCGGUGUugUCGuCCUCGg -5'
13345 3' -57 NC_003409.1 + 61864 0.68 0.727012
Target:  5'- -uGCAGGcAGuCCAgguCGACAGCGGGgacggggggugAGCCu -3'
miRNA:   3'- guCGUCC-UC-GGU---GUUGUCGUCC-----------UCGG- -5'
13345 3' -57 NC_003409.1 + 116862 0.68 0.716979
Target:  5'- aGGcCGGGAGCCuuggGCAACGGUGGGAu-- -3'
miRNA:   3'- gUC-GUCCUCGG----UGUUGUCGUCCUcgg -5'
13345 3' -57 NC_003409.1 + 13856 0.68 0.716979
Target:  5'- gCAGuCAGGu-CCugGACcucauacuGCGGGAGCCg -3'
miRNA:   3'- -GUC-GUCCucGGugUUGu-------CGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 76909 0.68 0.705858
Target:  5'- aGGCgacgaagAGGAGCCucgACAACacgGGCGGGGGUUg -3'
miRNA:   3'- gUCG-------UCCUCGG---UGUUG---UCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 131523 0.68 0.6967
Target:  5'- cCAGUGGGuguGCCAC-GCAGCGGuAGUCc -3'
miRNA:   3'- -GUCGUCCu--CGGUGuUGUCGUCcUCGG- -5'
13345 3' -57 NC_003409.1 + 84314 0.68 0.6967
Target:  5'- aAGCGGGAGCUauGCGAUAcGCuGGAcGCa -3'
miRNA:   3'- gUCGUCCUCGG--UGUUGU-CGuCCU-CGg -5'
13345 3' -57 NC_003409.1 + 103623 0.68 0.6967
Target:  5'- -uGCAGGG---ACAACGGCAGGGGgCg -3'
miRNA:   3'- guCGUCCUcggUGUUGUCGUCCUCgG- -5'
13345 3' -57 NC_003409.1 + 21769 0.68 0.686472
Target:  5'- aGGCAGucAGCacaGCGACgAGCAGGAuGCCc -3'
miRNA:   3'- gUCGUCc-UCGg--UGUUG-UCGUCCU-CGG- -5'
13345 3' -57 NC_003409.1 + 30969 0.69 0.665887
Target:  5'- aGGCGGGGGUgGguuCAGCGGguGGugcGCCa -3'
miRNA:   3'- gUCGUCCUCGgU---GUUGUCguCCu--CGG- -5'
13345 3' -57 NC_003409.1 + 130947 0.69 0.665887
Target:  5'- --cCAGG-GCCAcCAGCAGCuGGaAGCCc -3'
miRNA:   3'- gucGUCCuCGGU-GUUGUCGuCC-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.