miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 125564 0.93 0.013118
Target:  5'- gGGAGCCACAGCAGCGGGAGCCaCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCUCGGgGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125535 0.81 0.090885
Target:  5'- cGGAGCCACAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- -CCUCGGUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125175 0.66 0.675967
Target:  5'- aGGAGCagcaggaugaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- -CCUCGg---------UGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125129 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125093 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125040 0.7 0.42421
Target:  5'- aGGAGCaggaGCAGCAGgAGGAGCaggaGCa -3'
miRNA:   3'- -CCUCGg---UGUCGUCgUCCUCGgggaCG- -5'
13345 5' -60.4 NC_003409.1 + 123132 0.67 0.635683
Target:  5'- -uGGCCACuaacaGGCAGGcGCuCCCUGUc -3'
miRNA:   3'- ccUCGGUGucg--UCGUCCuCG-GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 122924 0.68 0.575316
Target:  5'- uGGuGCCAaaagucCAGguGuUGGGAGCCCCccaGCa -3'
miRNA:   3'- -CCuCGGU------GUCguC-GUCCUCGGGGa--CG- -5'
13345 5' -60.4 NC_003409.1 + 118873 0.71 0.373867
Target:  5'- uGGAGUgGCGGUgGGCGGG-GCCCCUa- -3'
miRNA:   3'- -CCUCGgUGUCG-UCGUCCuCGGGGAcg -5'
13345 5' -60.4 NC_003409.1 + 116242 0.66 0.655862
Target:  5'- aGGAGCUgucCGGCGGCcgcGGAuGCCCUgaGCu -3'
miRNA:   3'- -CCUCGGu--GUCGUCGu--CCU-CGGGGa-CG- -5'
13345 5' -60.4 NC_003409.1 + 115158 0.66 0.685971
Target:  5'- cGA-CCAUGGCGGCAGcGGCagaCCUGUg -3'
miRNA:   3'- cCUcGGUGUCGUCGUCcUCGg--GGACG- -5'
13345 5' -60.4 NC_003409.1 + 109843 0.7 0.459938
Target:  5'- aGAcGCCGCGGCGGgAGGcgguGGCgCCCgGCg -3'
miRNA:   3'- cCU-CGGUGUCGUCgUCC----UCG-GGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 109108 0.66 0.665928
Target:  5'- aGGAGCCACuGUccc-GGAGCCggCUGCg -3'
miRNA:   3'- -CCUCGGUGuCGucguCCUCGGg-GACG- -5'
13345 5' -60.4 NC_003409.1 + 108699 0.71 0.371458
Target:  5'- aGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCCCaGCu -3'
miRNA:   3'- -CCU-CGGUGUCGUCG--------------UCCU---CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 107805 0.73 0.312612
Target:  5'- -aGGCCACGGUgGGCAcgccccuGGAGCuCCCUGCc -3'
miRNA:   3'- ccUCGGUGUCG-UCGU-------CCUCG-GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 107420 0.66 0.675967
Target:  5'- -uAGCCuucGCGGUGGGAGCCUgUUGCa -3'
miRNA:   3'- ccUCGGuguCGUCGUCCUCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 103891 0.7 0.44187
Target:  5'- -aGGCCAUGGCAGCcc-AGCCUCUGUa -3'
miRNA:   3'- ccUCGGUGUCGUCGuccUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 102291 0.67 0.595352
Target:  5'- cGGuGCCugGGCAGCuacAGUCCCaccgGCu -3'
miRNA:   3'- -CCuCGGugUCGUCGuccUCGGGGa---CG- -5'
13345 5' -60.4 NC_003409.1 + 91747 0.66 0.675967
Target:  5'- --uGCCAaGGCaAGgGGGuGuCCCCUGCa -3'
miRNA:   3'- ccuCGGUgUCG-UCgUCCuC-GGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 90286 0.67 0.635683
Target:  5'- -cAGCCGaGGCGGCGauuGAGCCCuCUGUu -3'
miRNA:   3'- ccUCGGUgUCGUCGUc--CUCGGG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.