miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 128238 0.67 0.605413
Target:  5'- -aGGUgAgGGCAGCA-GAGCCCC-GCa -3'
miRNA:   3'- ccUCGgUgUCGUCGUcCUCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 102291 0.67 0.595352
Target:  5'- cGGuGCCugGGCAGCuacAGUCCCaccgGCu -3'
miRNA:   3'- -CCuCGGugUCGUCGuccUCGGGGa---CG- -5'
13345 5' -60.4 NC_003409.1 + 61586 0.67 0.591334
Target:  5'- uGGAGCCugAGguGagaccuacuGUCCCUGCu -3'
miRNA:   3'- -CCUCGGugUCguCguccu----CGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 122924 0.68 0.575316
Target:  5'- uGGuGCCAaaagucCAGguGuUGGGAGCCCCccaGCa -3'
miRNA:   3'- -CCuCGGU------GUCguC-GUCCUCGGGGa--CG- -5'
13345 5' -60.4 NC_003409.1 + 24727 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24447 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24487 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24607 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24527 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24567 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24647 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 24687 0.68 0.545571
Target:  5'- cGGGGCucCugGGguGCugccGGGGCUCCUGg -3'
miRNA:   3'- -CCUCG--GugUCguCGu---CCUCGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 3688 0.68 0.535762
Target:  5'- aGGAGagacugUACGGCGGCAaacuGGuGCCCgUGCc -3'
miRNA:   3'- -CCUCg-----GUGUCGUCGU----CCuCGGGgACG- -5'
13345 5' -60.4 NC_003409.1 + 21769 0.69 0.506731
Target:  5'- aGGcAGUcagCACAGCgacgAGCAGGAuGCCCUUGg -3'
miRNA:   3'- -CC-UCG---GUGUCG----UCGUCCU-CGGGGACg -5'
13345 5' -60.4 NC_003409.1 + 6279 0.69 0.487754
Target:  5'- -aAGCCACcuCGGU-GGAGCUCCUGUg -3'
miRNA:   3'- ccUCGGUGucGUCGuCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 133703 0.69 0.478392
Target:  5'- --cGCCAgCGGUAGCAGGucuGCCCCc-- -3'
miRNA:   3'- ccuCGGU-GUCGUCGUCCu--CGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 109843 0.7 0.459938
Target:  5'- aGAcGCCGCGGCGGgAGGcgguGGCgCCCgGCg -3'
miRNA:   3'- cCU-CGGUGUCGUCgUCC----UCG-GGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 70540 0.7 0.459938
Target:  5'- uGGGG-CGCGGCAGCugacucaaaaAGGucacuGCCUCUGCc -3'
miRNA:   3'- -CCUCgGUGUCGUCG----------UCCu----CGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 103891 0.7 0.44187
Target:  5'- -aGGCCAUGGCAGCcc-AGCCUCUGUa -3'
miRNA:   3'- ccUCGGUGUCGUCGuccUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 42701 0.7 0.44187
Target:  5'- -cGGUgGCAGUAGUAGGGGgCCCUcgaGCg -3'
miRNA:   3'- ccUCGgUGUCGUCGUCCUCgGGGA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.