miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13346 3' -49.4 NC_003409.1 + 26452 0.66 0.997366
Target:  5'- cGCC-AUcUCUGCAGCUGgGguGGAAGu -3'
miRNA:   3'- -UGGaUGuAGAUGUUGGCgCuuCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 49064 0.66 0.996872
Target:  5'- cGCCUGCGUCUACuGCUGCa------- -3'
miRNA:   3'- -UGGAUGUAGAUGuUGGCGcuuccuuc -5'
13346 3' -49.4 NC_003409.1 + 82925 0.66 0.995652
Target:  5'- gGCCUGCAaacgCUugGGgcuuUCGUGGAGGAAc -3'
miRNA:   3'- -UGGAUGUa---GAugUU----GGCGCUUCCUUc -5'
13346 3' -49.4 NC_003409.1 + 74108 0.66 0.995652
Target:  5'- cACCUugGUCUccgucAUGACCGCcc-GGAAGc -3'
miRNA:   3'- -UGGAugUAGA-----UGUUGGCGcuuCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 55181 0.67 0.99407
Target:  5'- cACaggcCAUCUACAGCCuccCGAAGGAGc -3'
miRNA:   3'- -UGgau-GUAGAUGUUGGc--GCUUCCUUc -5'
13346 3' -49.4 NC_003409.1 + 110481 0.67 0.99407
Target:  5'- uCC-GC-UUUGCGAUCGCGAGGGAu- -3'
miRNA:   3'- uGGaUGuAGAUGUUGGCGCUUCCUuc -5'
13346 3' -49.4 NC_003409.1 + 77281 0.67 0.99194
Target:  5'- cACgUACAUCUACGcguaccugacaugGCCGCGcccAGGGGc -3'
miRNA:   3'- -UGgAUGUAGAUGU-------------UGGCGCu--UCCUUc -5'
13346 3' -49.4 NC_003409.1 + 10011 0.68 0.989527
Target:  5'- aGCCagUACcgCUGCuGCCGgCGgcGGggGg -3'
miRNA:   3'- -UGG--AUGuaGAUGuUGGC-GCuuCCuuC- -5'
13346 3' -49.4 NC_003409.1 + 31853 0.68 0.989527
Target:  5'- aGCCUGCAgCUACuuaCGUGcuGGAGGa -3'
miRNA:   3'- -UGGAUGUaGAUGuugGCGCuuCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 31196 0.68 0.988049
Target:  5'- -aCUGCggCUGCuGCUGCaGAGGAGGa -3'
miRNA:   3'- ugGAUGuaGAUGuUGGCGcUUCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 25584 0.68 0.984613
Target:  5'- cCCUACGU----GugCGCGggGGggGg -3'
miRNA:   3'- uGGAUGUAgaugUugGCGCuuCCuuC- -5'
13346 3' -49.4 NC_003409.1 + 111845 0.69 0.978115
Target:  5'- uCCUcGCGUCgGCcACCGCGggGGcGGc -3'
miRNA:   3'- uGGA-UGUAGaUGuUGGCGCuuCCuUC- -5'
13346 3' -49.4 NC_003409.1 + 58818 0.7 0.959405
Target:  5'- uCC-ACGUCUACgGGCUGUGAGGGAc- -3'
miRNA:   3'- uGGaUGUAGAUG-UUGGCGCUUCCUuc -5'
13346 3' -49.4 NC_003409.1 + 48352 0.72 0.901632
Target:  5'- aACCgcgagACAUCU-CAGCCGgGuguGGGAAGa -3'
miRNA:   3'- -UGGa----UGUAGAuGUUGGCgCu--UCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 52477 0.73 0.87278
Target:  5'- -aCUGCGUCUGCGAuuuCCGCGucgcGAGGAAu -3'
miRNA:   3'- ugGAUGUAGAUGUU---GGCGC----UUCCUUc -5'
13346 3' -49.4 NC_003409.1 + 15618 0.75 0.775146
Target:  5'- cACCaUACAgcuUCUACGACUGC-AAGGAAGa -3'
miRNA:   3'- -UGG-AUGU---AGAUGUUGGCGcUUCCUUC- -5'
13346 3' -49.4 NC_003409.1 + 127196 1.09 0.011624
Target:  5'- gACCUACAUCUACAACCGCGAAGGAAGc -3'
miRNA:   3'- -UGGAUGUAGAUGUUGGCGCUUCCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.