Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13346 | 5' | -55.5 | NC_003409.1 | + | 97134 | 0.66 | 0.916359 |
Target: 5'- --aUCCAggccaaGGCGGCCGGGGugacgcuuguuaacGUGgUGGa -3' miRNA: 3'- cugAGGUag----CUGCCGGCCCU--------------UAC-ACC- -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 107891 | 0.66 | 0.912263 |
Target: 5'- gGACUUCAggugCGAUcagaGGUCGcGGAuuAUGUGGa -3' miRNA: 3'- -CUGAGGUa---GCUG----CCGGC-CCU--UACACC- -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 46186 | 0.67 | 0.899923 |
Target: 5'- uGGCggCCA-CGugGGCCGGGGcgAUGa-- -3' miRNA: 3'- -CUGa-GGUaGCugCCGGCCCU--UACacc -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 29732 | 0.71 | 0.693111 |
Target: 5'- uGACUUgCGUCGAUugGGauGGGggUGUGGg -3' miRNA: 3'- -CUGAG-GUAGCUG--CCggCCCuuACACC- -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 120820 | 0.74 | 0.531013 |
Target: 5'- --aUCCAUCGGCGGUCGGGcuGAUGguuuucGGg -3' miRNA: 3'- cugAGGUAGCUGCCGGCCC--UUACa-----CC- -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 6394 | 0.76 | 0.418662 |
Target: 5'- aGGCgggggugCCAUgGACGGCCGaGggUGUGGc -3' miRNA: 3'- -CUGa------GGUAgCUGCCGGCcCuuACACC- -5' |
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13346 | 5' | -55.5 | NC_003409.1 | + | 127161 | 1.11 | 0.002398 |
Target: 5'- cGACUCCAUCGACGGCCGGGAAUGUGGa -3' miRNA: 3'- -CUGAGGUAGCUGCCGGCCCUUACACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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