Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 108750 | 0.72 | 0.86061 |
Target: 5'- gGAGGCCGGCcuGCuCCGCUUccuguACCa -3' miRNA: 3'- gUUCCGGUCGuuUG-GGUGAAau---UGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 56608 | 0.68 | 0.982068 |
Target: 5'- -uAGGCCGGUGAACUccgccgccaugaCACUcaggUUGACCUg -3' miRNA: 3'- guUCCGGUCGUUUGG------------GUGA----AAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 54958 | 0.68 | 0.977384 |
Target: 5'- gCAAGGCCGGCcGGCC-ACUgcagaUUGGCUg -3' miRNA: 3'- -GUUCCGGUCGuUUGGgUGA-----AAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 77259 | 0.69 | 0.968755 |
Target: 5'- aCAuGGCCgcgcccaggGGCAGACCCAaaaagGACCUu -3' miRNA: 3'- -GUuCCGG---------UCGUUUGGGUgaaa-UUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 128235 | 0.69 | 0.968755 |
Target: 5'- uGAGGgCAGCAGAgcCCCGCaugGGCCc -3' miRNA: 3'- gUUCCgGUCGUUU--GGGUGaaaUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 3397 | 0.69 | 0.965417 |
Target: 5'- gGGGGCC-GCAGACCCAauaUUUu-CCUc -3' miRNA: 3'- gUUCCGGuCGUUUGGGUg--AAAuuGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 89988 | 0.69 | 0.953921 |
Target: 5'- aCAGGGCCAGgAgacguuAACCUGCUggcGGCCg -3' miRNA: 3'- -GUUCCGGUCgU------UUGGGUGAaa-UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 75371 | 0.7 | 0.940089 |
Target: 5'- -cAGGCacggGGCGAccugcGCCCugUUUGGCCUu -3' miRNA: 3'- guUCCGg---UCGUU-----UGGGugAAAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 46757 | 0.7 | 0.929522 |
Target: 5'- gGGGGCCccAGCAAGCCUggcagaauACUcaUUAACCa -3' miRNA: 3'- gUUCCGG--UCGUUUGGG--------UGA--AAUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 82017 | 0.67 | 0.987676 |
Target: 5'- --uGGCCAGU---CCCACUgguACCa -3' miRNA: 3'- guuCCGGUCGuuuGGGUGAaauUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 121287 | 0.67 | 0.987676 |
Target: 5'- ---uGCCGGuCAAGCCCGCUcauaaGACCa -3' miRNA: 3'- guucCGGUC-GUUUGGGUGAaa---UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 68792 | 0.67 | 0.990585 |
Target: 5'- cCAGGGCU-GUAA--UCACUUUAACCUa -3' miRNA: 3'- -GUUCCGGuCGUUugGGUGAAAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 80659 | 0.66 | 0.994775 |
Target: 5'- ---uGCCAGCGAACUCGUUUUGcaACCUc -3' miRNA: 3'- guucCGGUCGUUUGGGUGAAAU--UGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 75102 | 0.66 | 0.992925 |
Target: 5'- gGGGGCUGGC-AACCUACguaggUUGACa- -3' miRNA: 3'- gUUCCGGUCGuUUGGGUGa----AAUUGga -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 85885 | 0.66 | 0.992925 |
Target: 5'- --uGGuCCAGCGGAUCCGCggUGAUa- -3' miRNA: 3'- guuCC-GGUCGUUUGGGUGaaAUUGga -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 16780 | 0.66 | 0.992925 |
Target: 5'- gCGGGGCCAGCGuaauuuuuGGUCCGCUgugaUGACUg -3' miRNA: 3'- -GUUCCGGUCGU--------UUGGGUGAa---AUUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 107975 | 0.66 | 0.992925 |
Target: 5'- gCAGGGagcuCCAGgGGcguGCCCACcgUGGCCUg -3' miRNA: 3'- -GUUCC----GGUCgUU---UGGGUGaaAUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 68248 | 0.66 | 0.991821 |
Target: 5'- --uGGCCAGaCGGGCCCAUacgcccaAACCg -3' miRNA: 3'- guuCCGGUC-GUUUGGGUGaaa----UUGGa -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 123274 | 0.66 | 0.991821 |
Target: 5'- --uGGCCAGUAAGCUCAga--AGCCUc -3' miRNA: 3'- guuCCGGUCGUUUGGGUgaaaUUGGA- -5' |
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13347 | 3' | -49.7 | NC_003409.1 | + | 32288 | 0.67 | 0.990585 |
Target: 5'- -cAGGCUGGCGGAcaccuCCCACg-UGGCCa -3' miRNA: 3'- guUCCGGUCGUUU-----GGGUGaaAUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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