Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 77259 | 0.69 | 0.968755 |
Target: 5'- aCAuGGCCgcgcccaggGGCAGACCCAaaaagGACCUu -3' miRNA: 3'- -GUuCCGG---------UCGUUUGGGUgaaa-UUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 79015 | 0.66 | 0.992925 |
Target: 5'- cCAAGGCCAGCAuuguguUCCACac-GACg- -3' miRNA: 3'- -GUUCCGGUCGUuu----GGGUGaaaUUGga -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 80659 | 0.66 | 0.994775 |
Target: 5'- ---uGCCAGCGAACUCGUUUUGcaACCUc -3' miRNA: 3'- guucCGGUCGUUUGGGUGAAAU--UGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 81875 | 0.72 | 0.884009 |
Target: 5'- --uGGCCAGUuaauCCCACUauaUAACCUg -3' miRNA: 3'- guuCCGGUCGuuu-GGGUGAa--AUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 82017 | 0.67 | 0.987676 |
Target: 5'- --uGGCCAGU---CCCACUgguACCa -3' miRNA: 3'- guuCCGGUCGuuuGGGUGAaauUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 85885 | 0.66 | 0.992925 |
Target: 5'- --uGGuCCAGCGGAUCCGCggUGAUa- -3' miRNA: 3'- guuCC-GGUCGUUUGGGUGaaAUUGga -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 89988 | 0.69 | 0.953921 |
Target: 5'- aCAGGGCCAGgAgacguuAACCUGCUggcGGCCg -3' miRNA: 3'- -GUUCCGGUCgU------UUGGGUGAaa-UUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 91714 | 0.69 | 0.965417 |
Target: 5'- --uGGCCAcuccCAAGCCCACaugGGCCUa -3' miRNA: 3'- guuCCGGUc---GUUUGGGUGaaaUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 92368 | 0.68 | 0.97473 |
Target: 5'- aGGGGCacaAGCuugucACCCACUUuguaaaUAGCCUg -3' miRNA: 3'- gUUCCGg--UCGuu---UGGGUGAA------AUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 105745 | 0.74 | 0.80769 |
Target: 5'- aCAGGGCCGGUugaagGAGCCCACguucucccGCCa -3' miRNA: 3'- -GUUCCGGUCG-----UUUGGGUGaaau----UGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 107975 | 0.66 | 0.992925 |
Target: 5'- gCAGGGagcuCCAGgGGcguGCCCACcgUGGCCUg -3' miRNA: 3'- -GUUCC----GGUCgUU---UGGGUGaaAUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 108405 | 0.66 | 0.991703 |
Target: 5'- aCGAGGUgaaaaagCAGCGAGCaaaCACUgaGACCg -3' miRNA: 3'- -GUUCCG-------GUCGUUUGg--GUGAaaUUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 108636 | 0.67 | 0.987676 |
Target: 5'- --uGGCCGGcCAGGCCCAgga-GACCa -3' miRNA: 3'- guuCCGGUC-GUUUGGGUgaaaUUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 108750 | 0.72 | 0.86061 |
Target: 5'- gGAGGCCGGCcuGCuCCGCUUccuguACCa -3' miRNA: 3'- gUUCCGGUCGuuUG-GGUGAAau---UGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 110990 | 0.79 | 0.508828 |
Target: 5'- gAAGGCCGGCGcccucccgacacgcAACCCgucACUUUAACCUu -3' miRNA: 3'- gUUCCGGUCGU--------------UUGGG---UGAAAUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 121287 | 0.67 | 0.987676 |
Target: 5'- ---uGCCGGuCAAGCCCGCUcauaaGACCa -3' miRNA: 3'- guucCGGUC-GUUUGGGUGAaa---UUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 123274 | 0.66 | 0.991821 |
Target: 5'- --uGGCCAGUAAGCUCAga--AGCCUc -3' miRNA: 3'- guuCCGGUCGUUUGGGUgaaaUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 127611 | 1.08 | 0.0108 |
Target: 5'- gCAAGGCCAGCAAACCCACUUUAACCUu -3' miRNA: 3'- -GUUCCGGUCGUUUGGGUGAAAUUGGA- -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 128235 | 0.69 | 0.968755 |
Target: 5'- uGAGGgCAGCAGAgcCCCGCaugGGCCc -3' miRNA: 3'- gUUCCgGUCGUUU--GGGUGaaaUUGGa -5' |
|||||||
13347 | 3' | -49.7 | NC_003409.1 | + | 130947 | 0.67 | 0.985982 |
Target: 5'- cCAGGGCCaccAGCAgcuggaAGCCCACcuc-GCCa -3' miRNA: 3'- -GUUCCGG---UCGU------UUGGGUGaaauUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home