Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 127570 | 1.11 | 0.010568 |
Target: 5'- gUGAGCCACCAGGACUUAAAUUUGCUGg -3' miRNA: 3'- -ACUCGGUGGUCCUGAAUUUAAACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24736 | 0.74 | 0.882671 |
Target: 5'- gGGGCgCGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCUCG-GUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 13993 | 0.73 | 0.923288 |
Target: 5'- cGAGCCACCGGGaACUg-----UGCg- -3' miRNA: 3'- aCUCGGUGGUCC-UGAauuuaaACGac -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 120440 | 0.71 | 0.961923 |
Target: 5'- uUGAgcGCCACC-GGACggGGAUUuaUGCUGu -3' miRNA: 3'- -ACU--CGGUGGuCCUGaaUUUAA--ACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 49242 | 0.71 | 0.967937 |
Target: 5'- cGAGCCGCCAGGAacacgcgaaUGCa- -3' miRNA: 3'- aCUCGGUGGUCCUgaauuuaa-ACGac -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 32418 | 0.7 | 0.972056 |
Target: 5'- cGAGCCGcugagcCCGGGGCUUAGGag-GCUc -3' miRNA: 3'- aCUCGGU------GGUCCUGAAUUUaaaCGAc -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 126908 | 0.7 | 0.974955 |
Target: 5'- gGAGCCACCgguaaaguAGGACUaGAcacaaaUGCUGg -3' miRNA: 3'- aCUCGGUGG--------UCCUGAaUUuaa---ACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24695 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24615 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24575 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24535 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24495 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24455 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 112252 | 0.7 | 0.980084 |
Target: 5'- cGAGCCACCAGGGgaUGGuga-GCg- -3' miRNA: 3'- aCUCGGUGGUCCUgaAUUuaaaCGac -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 24655 | 0.7 | 0.980084 |
Target: 5'- gGuGCUGCCGGGGCUccuGGggUGCUGc -3' miRNA: 3'- aCuCGGUGGUCCUGAau-UUaaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 23282 | 0.68 | 0.992065 |
Target: 5'- --cGCCGCCAu--CUUGAAUUUGCUa -3' miRNA: 3'- acuCGGUGGUccuGAAUUUAAACGAc -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 119727 | 0.68 | 0.992065 |
Target: 5'- --cGCCGCCAu--CUUGAAUUUGCUa -3' miRNA: 3'- acuCGGUGGUccuGAAUUUAAACGAc -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 63801 | 0.67 | 0.995731 |
Target: 5'- aGGGUC-CCGGGAgugUGAAUcUGCUGa -3' miRNA: 3'- aCUCGGuGGUCCUga-AUUUAaACGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 95756 | 0.67 | 0.996959 |
Target: 5'- uUGGGCCGCUggAGGACgccucUGAGgacGCUGc -3' miRNA: 3'- -ACUCGGUGG--UCCUGa----AUUUaaaCGAC- -5' |
|||||||
13347 | 5' | -47.8 | NC_003409.1 | + | 80696 | 0.67 | 0.996959 |
Target: 5'- -aGGCgACCAGGACUgGGAUaUGUUa -3' miRNA: 3'- acUCGgUGGUCCUGAaUUUAaACGAc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home