miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13348 3' -55.8 NC_003409.1 + 79873 0.66 0.889384
Target:  5'- -uGGUGGUgcgcgcgcgccaccgAUUAUCUCCAacaGCGGCu- -3'
miRNA:   3'- ccCCACCA---------------UAAUAGGGGUg--CGCCGuc -5'
13348 3' -55.8 NC_003409.1 + 65699 0.67 0.879645
Target:  5'- uGGGUGGgaga--CCCCACGCagacuaugcaaGGCAc -3'
miRNA:   3'- cCCCACCauaauaGGGGUGCG-----------CCGUc -5'
13348 3' -55.8 NC_003409.1 + 83796 0.67 0.879645
Target:  5'- cGGGGUuuuuccauaauGGaUGUUGggugCCaCCugGUGGCGGu -3'
miRNA:   3'- -CCCCA-----------CC-AUAAUa---GG-GGugCGCCGUC- -5'
13348 3' -55.8 NC_003409.1 + 108530 0.67 0.872422
Target:  5'- gGGGGgaaggccgcGGUGgaa--UCCugGCGGCAGa -3'
miRNA:   3'- -CCCCa--------CCAUaauagGGGugCGCCGUC- -5'
13348 3' -55.8 NC_003409.1 + 111836 0.67 0.872422
Target:  5'- aGGGG-GGUu---UCCUCGCGuCGGCc- -3'
miRNA:   3'- -CCCCaCCAuaauAGGGGUGC-GCCGuc -5'
13348 3' -55.8 NC_003409.1 + 42559 0.67 0.85733
Target:  5'- -cGGUGGUGgagUGUUuaCGCGCGGaCAGa -3'
miRNA:   3'- ccCCACCAUa--AUAGggGUGCGCC-GUC- -5'
13348 3' -55.8 NC_003409.1 + 74715 0.67 0.847078
Target:  5'- gGGGGUGGUAUUuccUCCguugucgacuauaaCCugGCGuGUAa -3'
miRNA:   3'- -CCCCACCAUAAu--AGG--------------GGugCGC-CGUc -5'
13348 3' -55.8 NC_003409.1 + 18700 0.68 0.824743
Target:  5'- -uGGUGGUGUUuaccuauaCCCuCGCGGCAu -3'
miRNA:   3'- ccCCACCAUAAuag-----GGGuGCGCCGUc -5'
13348 3' -55.8 NC_003409.1 + 69806 0.68 0.822179
Target:  5'- aGGGUGGUccacaggacggcaaAUagcgcaaagAUCCCCAUGgGGCAa -3'
miRNA:   3'- cCCCACCA--------------UAa--------UAGGGGUGCgCCGUc -5'
13348 3' -55.8 NC_003409.1 + 85816 0.68 0.807361
Target:  5'- gGGGGUGGaaaauUCUCCAgGCaguugGGCGGg -3'
miRNA:   3'- -CCCCACCauaauAGGGGUgCG-----CCGUC- -5'
13348 3' -55.8 NC_003409.1 + 51935 0.69 0.755516
Target:  5'- aGGGUGGgcuacggcgCCCuCugGCGGCGa -3'
miRNA:   3'- cCCCACCauaaua---GGG-GugCGCCGUc -5'
13348 3' -55.8 NC_003409.1 + 130892 0.71 0.661594
Target:  5'- uGGGGUGGUGUggGUCCgUACGUGuauGguGa -3'
miRNA:   3'- -CCCCACCAUAa-UAGGgGUGCGC---CguC- -5'
13348 3' -55.8 NC_003409.1 + 83839 0.71 0.629793
Target:  5'- cGGGUGuGUcuuguuuGUUggCUCCACGUGGCGGa -3'
miRNA:   3'- cCCCAC-CA-------UAAuaGGGGUGCGCCGUC- -5'
13348 3' -55.8 NC_003409.1 + 128713 1.1 0.002533
Target:  5'- uGGGGUGGUAUUAUCCCCACGCGGCAGc -3'
miRNA:   3'- -CCCCACCAUAAUAGGGGUGCGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.