miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13348 5' -50.7 NC_003409.1 + 101727 0.66 0.991262
Target:  5'- aUCUguUCCACGCAugUGaacAGGCCGa-- -3'
miRNA:   3'- -AGG--AGGUGCGUugACau-UCUGGUagu -5'
13348 5' -50.7 NC_003409.1 + 120211 0.66 0.989985
Target:  5'- aCgUCCAgGCGGCUGgcacacGGGCCGUgAg -3'
miRNA:   3'- aGgAGGUgCGUUGACau----UCUGGUAgU- -5'
13348 5' -50.7 NC_003409.1 + 35595 0.67 0.985266
Target:  5'- cCCUCUACGCAACgccuagGUuuccgcccAGACCucUCAu -3'
miRNA:   3'- aGGAGGUGCGUUGa-----CAu-------UCUGGu-AGU- -5'
13348 5' -50.7 NC_003409.1 + 35782 0.67 0.981285
Target:  5'- aCCUCCG-GCAACUaggccGgcAGACgCGUCAa -3'
miRNA:   3'- aGGAGGUgCGUUGA-----CauUCUG-GUAGU- -5'
13348 5' -50.7 NC_003409.1 + 22612 0.69 0.957139
Target:  5'- uUCCUCCccaaACGCGACgauaAAGACCAg-- -3'
miRNA:   3'- -AGGAGG----UGCGUUGaca-UUCUGGUagu -5'
13348 5' -50.7 NC_003409.1 + 27944 0.69 0.957139
Target:  5'- cCCUCCAgUGCAcgccGCUagGUGGGACCGUgGg -3'
miRNA:   3'- aGGAGGU-GCGU----UGA--CAUUCUGGUAgU- -5'
13348 5' -50.7 NC_003409.1 + 23211 0.69 0.953074
Target:  5'- aCCUCCaggucACGCcGCUagGUGGGACCGUgAg -3'
miRNA:   3'- aGGAGG-----UGCGuUGA--CAUUCUGGUAgU- -5'
13348 5' -50.7 NC_003409.1 + 119798 0.69 0.953074
Target:  5'- aCCUCCaggucACGCcGCUagGUGGGACCGUgAg -3'
miRNA:   3'- aGGAGG-----UGCGuUGA--CAUUCUGGUAgU- -5'
13348 5' -50.7 NC_003409.1 + 48036 0.69 0.947411
Target:  5'- aCCUCCACGCAgggagacuucacagACg--GAG-CCGUCAu -3'
miRNA:   3'- aGGAGGUGCGU--------------UGacaUUCuGGUAGU- -5'
13348 5' -50.7 NC_003409.1 + 7821 0.74 0.771104
Target:  5'- gUCCUCCACGgAGCUaaaAAGACCAcCAc -3'
miRNA:   3'- -AGGAGGUGCgUUGAca-UUCUGGUaGU- -5'
13348 5' -50.7 NC_003409.1 + 69099 0.74 0.751139
Target:  5'- aUCCUCUggauCGCAGCaGUGGGACCAcCAc -3'
miRNA:   3'- -AGGAGGu---GCGUUGaCAUUCUGGUaGU- -5'
13348 5' -50.7 NC_003409.1 + 128679 1.1 0.007237
Target:  5'- gUCCUCCACGCAACUGUAAGACCAUCAc -3'
miRNA:   3'- -AGGAGGUGCGUUGACAUUCUGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.