Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13349 | 5' | -55.4 | NC_003409.1 | + | 52592 | 0.66 | 0.870773 |
Target: 5'- -gUCCAUCCagcaGGC-GUGGCGGCc-- -3' miRNA: 3'- caAGGUAGGca--CCGuCACCGUCGuac -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 110772 | 0.66 | 0.870018 |
Target: 5'- gGUUCCggUCGguuuauuuggGGUgauugugAGUGGCGGCGUGg -3' miRNA: 3'- -CAAGGuaGGCa---------CCG-------UCACCGUCGUAC- -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 115645 | 0.66 | 0.870018 |
Target: 5'- aGUUCCGguaugCCGcucgcgggugcggUGGUGGUgucuguaaucuGGCAGCAUGg -3' miRNA: 3'- -CAAGGUa----GGC-------------ACCGUCA-----------CCGUCGUAC- -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 133094 | 0.67 | 0.855238 |
Target: 5'- -gUCCGgaugCCGUgaaggcGGCGGUGGCAgaGCAc- -3' miRNA: 3'- caAGGUa---GGCA------CCGUCACCGU--CGUac -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 40529 | 0.67 | 0.855238 |
Target: 5'- --aCC-UCUccGGCGGUGGCGGcCAUGg -3' miRNA: 3'- caaGGuAGGcaCCGUCACCGUC-GUAC- -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 26333 | 0.69 | 0.716237 |
Target: 5'- uUUCUgcugauGUCUGUGGUGGUGGCugggcuugucGGCGUGg -3' miRNA: 3'- cAAGG------UAGGCACCGUCACCG----------UCGUAC- -5' |
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13349 | 5' | -55.4 | NC_003409.1 | + | 130681 | 1.07 | 0.00305 |
Target: 5'- uGUUCCAUCCGUGGCAGUGGCAGCAUGu -3' miRNA: 3'- -CAAGGUAGGCACCGUCACCGUCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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