miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1335 5' -62.6 NC_001335.1 + 38811 0.66 0.352172
Target:  5'- uGGACGGCCgGcGGGUUcagcagGUacucgaUGGCCCGu -3'
miRNA:   3'- -CCUGCCGGgCuUCCGG------CAg-----ACCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 28273 0.67 0.30643
Target:  5'- cGACGGCCguAAuGCCGUCUGGCa-- -3'
miRNA:   3'- cCUGCCGGgcUUcCGGCAGACCGggu -5'
1335 5' -62.6 NC_001335.1 + 4174 0.67 0.30643
Target:  5'- aGACGGCCUucGGGCCGUC---CCCu -3'
miRNA:   3'- cCUGCCGGGcuUCCGGCAGaccGGGu -5'
1335 5' -62.6 NC_001335.1 + 40987 0.67 0.299264
Target:  5'- uGGugGaGCCCGAcgacgcaugAGcCUGUCUcacGGCCCAu -3'
miRNA:   3'- -CCugC-CGGGCU---------UCcGGCAGA---CCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 30035 0.68 0.271897
Target:  5'- cGcCGGCCuCGAAgGGCCGgg-GGUCCAc -3'
miRNA:   3'- cCuGCCGG-GCUU-CCGGCagaCCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 14627 0.68 0.258985
Target:  5'- aGAcCGGCCagaccaacgaGAAGGCCGUgCUGGUCg- -3'
miRNA:   3'- cCU-GCCGGg---------CUUCCGGCA-GACCGGgu -5'
1335 5' -62.6 NC_001335.1 + 4246 1.09 0.000203
Target:  5'- gGGACGGCCCGAAGGCCGUCUGGCCCAc -3'
miRNA:   3'- -CCUGCCGGGCUUCCGGCAGACCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 26675 0.74 0.091424
Target:  5'- cGACGGCCgGcucAAGGCCGUUcGGCUCGg -3'
miRNA:   3'- cCUGCCGGgC---UUCCGGCAGaCCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 5958 0.74 0.096518
Target:  5'- aGACcaGGCCCGAgcGGGUCGggCUGGCCUg -3'
miRNA:   3'- cCUG--CCGGGCU--UCCGGCa-GACCGGGu -5'
1335 5' -62.6 NC_001335.1 + 8604 0.73 0.110452
Target:  5'- gGGACGGUgacgCCGAuGGCC-UCUGGCCg- -3'
miRNA:   3'- -CCUGCCG----GGCUuCCGGcAGACCGGgu -5'
1335 5' -62.6 NC_001335.1 + 4916 0.72 0.129655
Target:  5'- --cCGGCuuGAucggcaAGGCCG-CUGGCCCGc -3'
miRNA:   3'- ccuGCCGggCU------UCCGGCaGACCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 34987 0.7 0.196743
Target:  5'- uGACGGCUCGAAGGaaacCUGGCCgGa -3'
miRNA:   3'- cCUGCCGGGCUUCCggcaGACCGGgU- -5'
1335 5' -62.6 NC_001335.1 + 26235 0.69 0.234667
Target:  5'- cGGGCuccaGGCCCcGAGGCgCGgguUCUGGCCgCGa -3'
miRNA:   3'- -CCUG----CCGGGcUUCCG-GC---AGACCGG-GU- -5'
1335 5' -62.6 NC_001335.1 + 46938 0.68 0.278545
Target:  5'- uGAUGGCCaaguacGGGCUGgagaUGGCCCAg -3'
miRNA:   3'- cCUGCCGGgcu---UCCGGCag--ACCGGGU- -5'
1335 5' -62.6 NC_001335.1 + 17614 0.66 0.352172
Target:  5'- --cCGGCCUGcAGGCCGa-UGGCCa- -3'
miRNA:   3'- ccuGCCGGGCuUCCGGCagACCGGgu -5'
1335 5' -62.6 NC_001335.1 + 22026 0.66 0.352172
Target:  5'- cGGAUGGCCUGuucGGUguaGUCcUGGCCgAa -3'
miRNA:   3'- -CCUGCCGGGCuu-CCGg--CAG-ACCGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.