Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 54399 | 0.66 | 0.765957 |
|
Target: 5'- -gCUGAcGUGggcGUGGcGGGAUGGUGCc -3' miRNA: 3'- gaGGCU-CACaa-CGCC-CCCUGCCACGa -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 134477 | 0.66 | 0.727995 |
|
Target: 5'- ---aGGGUGUcccCGGGGG-CGGUGCg -3' miRNA: 3'- gaggCUCACAac-GCCCCCuGCCACGa -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 114991 | 0.67 | 0.7085 |
|
Target: 5'- -gUUGAGaGUUggaagagacGCGGGGGugGGUGUg -3' miRNA: 3'- gaGGCUCaCAA---------CGCCCCCugCCACGa -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 36574 | 0.67 | 0.678811 |
|
Target: 5'- -gCCGAGUcGUUGCGGcGGGucaGG-GCg -3' miRNA: 3'- gaGGCUCA-CAACGCC-CCCug-CCaCGa -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 94331 | 0.68 | 0.648789 |
|
Target: 5'- -cCCGAcaaccgGcUGgGGGGGGCGGUGUUg -3' miRNA: 3'- gaGGCUca----CaACgCCCCCUGCCACGA- -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 30955 | 0.69 | 0.578636 |
|
Target: 5'- gCUCUGcGUGcuggagGCGGGGGugGGUucaGCg -3' miRNA: 3'- -GAGGCuCACaa----CGCCCCCugCCA---CGa -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 74546 | 0.69 | 0.548987 |
|
Target: 5'- aCUCCGGGccgaagGaaGCGGGGGAgGGUGa- -3' miRNA: 3'- -GAGGCUCa-----CaaCGCCCCCUgCCACga -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 105057 | 0.74 | 0.331175 |
|
Target: 5'- uUCCGcGGUGaugUGUGGGGGcUGGUGCUc -3' miRNA: 3'- gAGGC-UCACa--ACGCCCCCuGCCACGA- -5' |
|||||||
| 13350 | 5' | -59.4 | NC_003409.1 | + | 130935 | 1.08 | 0.00157 |
|
Target: 5'- cCUCCGAGUGUUGCGGGGGACGGUGCUg -3' miRNA: 3'- -GAGGCUCACAACGCCCCCUGCCACGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home