miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13351 5' -54.4 NC_003409.1 + 38178 0.67 0.912968
Target:  5'- cCUUGGCGCUGUGgccGccacacaaauagcucGCGugUCcGCCa -3'
miRNA:   3'- aGGACCGCGACACa--U---------------UGCugGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 131070 0.78 0.36711
Target:  5'- cCCUGGCGCUGgcGUAGCuGGCCUggcaGCCu -3'
miRNA:   3'- aGGACCGCGACa-CAUUG-CUGGGa---UGG- -5'
13351 5' -54.4 NC_003409.1 + 49411 0.76 0.46409
Target:  5'- gCUUGGCGCUGUaUGACuGCCCU-CCa -3'
miRNA:   3'- aGGACCGCGACAcAUUGcUGGGAuGG- -5'
13351 5' -54.4 NC_003409.1 + 74746 0.76 0.473564
Target:  5'- aCCUGGCGUguaaacGUGUA---ACCCUGCCa -3'
miRNA:   3'- aGGACCGCGa-----CACAUugcUGGGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 49092 0.71 0.727012
Target:  5'- uUCCUGGCGgcucgaCUGUGgcGCGccACCCcACUa -3'
miRNA:   3'- -AGGACCGC------GACACauUGC--UGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 30071 0.7 0.803445
Target:  5'- cCUUGGUGCUGUGc-GCGugCUaugUGCCc -3'
miRNA:   3'- aGGACCGCGACACauUGCugGG---AUGG- -5'
13351 5' -54.4 NC_003409.1 + 93134 0.69 0.812379
Target:  5'- aUCCgucggGGUGUgcacGUGUAAUGgGCCCUGCa -3'
miRNA:   3'- -AGGa----CCGCGa---CACAUUGC-UGGGAUGg -5'
13351 5' -54.4 NC_003409.1 + 75008 0.69 0.821145
Target:  5'- uUCCcaaagUGGCGCgcccgGUGACGAacaUCUGCCa -3'
miRNA:   3'- -AGG-----ACCGCGaca--CAUUGCUg--GGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 33815 0.69 0.846351
Target:  5'- gUCCauggcgGGCGCUGUcccUGGCGcGCCCgUACCc -3'
miRNA:   3'- -AGGa-----CCGCGACAc--AUUGC-UGGG-AUGG- -5'
13351 5' -54.4 NC_003409.1 + 56990 0.67 0.910552
Target:  5'- aUCCUGucCGCUGUGUGgaccAUGACgCUugACCu -3'
miRNA:   3'- -AGGACc-GCGACACAU----UGCUGgGA--UGG- -5'
13351 5' -54.4 NC_003409.1 + 27794 0.66 0.947176
Target:  5'- aUCUGGCGaucaGUGUAccauauucccACGACCC-AUCa -3'
miRNA:   3'- aGGACCGCga--CACAU----------UGCUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 109375 0.67 0.916518
Target:  5'- --gUGGCGCUGgccccgcGCGACCUgACCu -3'
miRNA:   3'- aggACCGCGACacau---UGCUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 77453 0.66 0.937934
Target:  5'- gCCUGGCGCUGa------GCCCaGCCg -3'
miRNA:   3'- aGGACCGCGACacauugcUGGGaUGG- -5'
13351 5' -54.4 NC_003409.1 + 31662 0.66 0.937934
Target:  5'- gUCUGG-GUgGUGUGACGGCUUggaUGCCg -3'
miRNA:   3'- aGGACCgCGaCACAUUGCUGGG---AUGG- -5'
13351 5' -54.4 NC_003409.1 + 37822 0.67 0.92224
Target:  5'- ----uGCGCUa-GUGGCGAUCCUGCCu -3'
miRNA:   3'- aggacCGCGAcaCAUUGCUGGGAUGG- -5'
13351 5' -54.4 NC_003409.1 + 38277 0.66 0.942676
Target:  5'- gCUUGGCGCccGUGaUGGCGccguCCCUuCCu -3'
miRNA:   3'- aGGACCGCGa-CAC-AUUGCu---GGGAuGG- -5'
13351 5' -54.4 NC_003409.1 + 68865 0.66 0.937934
Target:  5'- aCCUGGUGCUu----ACGGCCCaGCa -3'
miRNA:   3'- aGGACCGCGAcacauUGCUGGGaUGg -5'
13351 5' -54.4 NC_003409.1 + 116319 0.67 0.916518
Target:  5'- cCCUGGCGUUuUGga--GACCCUuaaagagaaagACCa -3'
miRNA:   3'- aGGACCGCGAcACauugCUGGGA-----------UGG- -5'
13351 5' -54.4 NC_003409.1 + 114609 0.68 0.877138
Target:  5'- cUCCgaGGCGCg--GgcACGGCCCUGa- -3'
miRNA:   3'- -AGGa-CCGCGacaCauUGCUGGGAUgg -5'
13351 5' -54.4 NC_003409.1 + 131201 1.12 0.00228
Target:  5'- gUCCUGGCGCUGUGUAACGACCCUACCu -3'
miRNA:   3'- -AGGACCGCGACACAUUGCUGGGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.