Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13351 | 5' | -54.4 | NC_003409.1 | + | 30071 | 0.7 | 0.803445 |
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Target: 5'- cCUUGGUGCUGUGc-GCGugCUaugUGCCc -3' miRNA: 3'- aGGACCGCGACACauUGCugGG---AUGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 119941 | 0.7 | 0.792515 |
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Target: 5'- gCCUGGCacGCggccaacauaaaGUGUgGAUGGCCCUGCUa -3' miRNA: 3'- aGGACCG--CGa-----------CACA-UUGCUGGGAUGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 49092 | 0.71 | 0.727012 |
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Target: 5'- uUCCUGGCGgcucgaCUGUGgcGCGccACCCcACUa -3' miRNA: 3'- -AGGACCGC------GACACauUGC--UGGGaUGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 128501 | 0.71 | 0.706872 |
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Target: 5'- uUCCaGGCagGCUGUGc-AUGACaCCUGCCg -3' miRNA: 3'- -AGGaCCG--CGACACauUGCUG-GGAUGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 74746 | 0.76 | 0.473564 |
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Target: 5'- aCCUGGCGUguaaacGUGUA---ACCCUGCCa -3' miRNA: 3'- aGGACCGCGa-----CACAUugcUGGGAUGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 49411 | 0.76 | 0.46409 |
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Target: 5'- gCUUGGCGCUGUaUGACuGCCCU-CCa -3' miRNA: 3'- aGGACCGCGACAcAUUGcUGGGAuGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 131070 | 0.78 | 0.36711 |
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Target: 5'- cCCUGGCGCUGgcGUAGCuGGCCUggcaGCCu -3' miRNA: 3'- aGGACCGCGACa-CAUUG-CUGGGa---UGG- -5' |
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| 13351 | 5' | -54.4 | NC_003409.1 | + | 131201 | 1.12 | 0.00228 |
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Target: 5'- gUCCUGGCGCUGUGUAACGACCCUACCu -3' miRNA: 3'- -AGGACCGCGACACAUUGCUGGGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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