miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13352 3' -47.5 NC_003409.1 + 131610 0.66 0.999669
Target:  5'- -aCGAGacaguUGuGUUUCaAGAGACCCUg -3'
miRNA:   3'- gaGCUUgaau-AC-CAAAG-UCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 52068 0.66 0.999669
Target:  5'- cCUCGAGCgccaUGUGGUgaguggcgCGGucuccgucuGACCCUg -3'
miRNA:   3'- -GAGCUUGa---AUACCAaa------GUCu--------CUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 133015 0.66 0.999637
Target:  5'- gUCGGGCgcggugccugGGgaUCugggcGAGACCCCg -3'
miRNA:   3'- gAGCUUGaaua------CCaaAGu----CUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 112466 0.67 0.999193
Target:  5'- gUCcAACUUuaaGGUg--AGAGACCCCg -3'
miRNA:   3'- gAGcUUGAAua-CCAaagUCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 46782 0.67 0.999193
Target:  5'- aCUgGAGguCUguagugcUGGUggCGGGGGCCCCa -3'
miRNA:   3'- -GAgCUU--GAau-----ACCAaaGUCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 68086 0.67 0.999122
Target:  5'- uUUGGGCgUAUGGgcccgucuggcCAGAGGCCUCg -3'
miRNA:   3'- gAGCUUGaAUACCaaa--------GUCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 4050 0.7 0.992188
Target:  5'- -cUGAACUugguaugaguUAUGGUcuguccuuuaUUgAGGGACCCCa -3'
miRNA:   3'- gaGCUUGA----------AUACCA----------AAgUCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 116524 0.7 0.988214
Target:  5'- -aCGAGCUaggaGUGGacUUUCuccgugagauGGAGACCCCg -3'
miRNA:   3'- gaGCUUGAa---UACC--AAAG----------UCUCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 62808 0.71 0.984608
Target:  5'- -aCGAGCUguccGUGGacgaucaUUUCAGGGccACCCCa -3'
miRNA:   3'- gaGCUUGAa---UACC-------AAAGUCUC--UGGGG- -5'
13352 3' -47.5 NC_003409.1 + 113559 0.72 0.975766
Target:  5'- cCUCGAACacgcgGUGGgccgUCAGcuGGGCCUCa -3'
miRNA:   3'- -GAGCUUGaa---UACCaa--AGUC--UCUGGGG- -5'
13352 3' -47.5 NC_003409.1 + 131771 1.14 0.010097
Target:  5'- gCUCGAACUUAUGGUUUCAGAGACCCCu -3'
miRNA:   3'- -GAGCUUGAAUACCAAAGUCUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.