miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13353 3' -48.7 NC_003409.1 + 24352 0.66 0.998182
Target:  5'- cGCAGuGC--GCGAGGgggGGCUGCUGu-- -3'
miRNA:   3'- -CGUC-CGgaUGUUCUa--CCGAUGAUuac -5'
13353 3' -48.7 NC_003409.1 + 54214 0.67 0.995914
Target:  5'- aGCAGGCgUGCAGGGagucguguguuuuucUGGCcgcCUGGUa -3'
miRNA:   3'- -CGUCCGgAUGUUCU---------------ACCGau-GAUUAc -5'
13353 3' -48.7 NC_003409.1 + 87632 0.67 0.994024
Target:  5'- -gGGGCa-GCAGGAuucagcUGGCUGCUAGg- -3'
miRNA:   3'- cgUCCGgaUGUUCU------ACCGAUGAUUac -5'
13353 3' -48.7 NC_003409.1 + 83313 0.67 0.992949
Target:  5'- aCAGGCC-AgGGGAUgugauggGGCUACUAAa- -3'
miRNA:   3'- cGUCCGGaUgUUCUA-------CCGAUGAUUac -5'
13353 3' -48.7 NC_003409.1 + 32860 0.68 0.990733
Target:  5'- uGCAGGCUgcuccuUGC-GGcgGGCUACUGc-- -3'
miRNA:   3'- -CGUCCGG------AUGuUCuaCCGAUGAUuac -5'
13353 3' -48.7 NC_003409.1 + 7382 0.68 0.989365
Target:  5'- uGCAGGCCgugucUGgGAGcAUGGCcugcagACUGGUGc -3'
miRNA:   3'- -CGUCCGG-----AUgUUC-UACCGa-----UGAUUAC- -5'
13353 3' -48.7 NC_003409.1 + 87949 0.68 0.989365
Target:  5'- gGUAGGCCUGCAccAGAUGaGUgaggguCUGAa- -3'
miRNA:   3'- -CGUCCGGAUGU--UCUAC-CGau----GAUUac -5'
13353 3' -48.7 NC_003409.1 + 34437 0.68 0.987845
Target:  5'- gGCuGGCCUGCGGGggGGaugucACUAAg- -3'
miRNA:   3'- -CGuCCGGAUGUUCuaCCga---UGAUUac -5'
13353 3' -48.7 NC_003409.1 + 61754 0.68 0.986161
Target:  5'- -aGGGCCUGCcAGAUGGCcggguuUACUc--- -3'
miRNA:   3'- cgUCCGGAUGuUCUACCG------AUGAuuac -5'
13353 3' -48.7 NC_003409.1 + 10366 0.69 0.977595
Target:  5'- aCAGGUCgACcguAGAUGGCUgucauaacGCUGGUGg -3'
miRNA:   3'- cGUCCGGaUGu--UCUACCGA--------UGAUUAC- -5'
13353 3' -48.7 NC_003409.1 + 85074 0.7 0.972077
Target:  5'- gGCAGGCUgu---GGUGGCUGCgauaacggAGUGg -3'
miRNA:   3'- -CGUCCGGauguuCUACCGAUGa-------UUAC- -5'
13353 3' -48.7 NC_003409.1 + 108745 0.72 0.92968
Target:  5'- aGCuGGCCUGCAGGAaaagcUGGCcgaGCUAc-- -3'
miRNA:   3'- -CGuCCGGAUGUUCU-----ACCGa--UGAUuac -5'
13353 3' -48.7 NC_003409.1 + 132423 1.11 0.008069
Target:  5'- aGCAGGCCUACAAGAUGGCUACUAAUGu -3'
miRNA:   3'- -CGUCCGGAUGUUCUACCGAUGAUUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.