Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13353 | 3' | -48.7 | NC_003409.1 | + | 24352 | 0.66 | 0.998182 |
Target: 5'- cGCAGuGC--GCGAGGgggGGCUGCUGu-- -3' miRNA: 3'- -CGUC-CGgaUGUUCUa--CCGAUGAUuac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 54214 | 0.67 | 0.995914 |
Target: 5'- aGCAGGCgUGCAGGGagucguguguuuuucUGGCcgcCUGGUa -3' miRNA: 3'- -CGUCCGgAUGUUCU---------------ACCGau-GAUUAc -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 87632 | 0.67 | 0.994024 |
Target: 5'- -gGGGCa-GCAGGAuucagcUGGCUGCUAGg- -3' miRNA: 3'- cgUCCGgaUGUUCU------ACCGAUGAUUac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 83313 | 0.67 | 0.992949 |
Target: 5'- aCAGGCC-AgGGGAUgugauggGGCUACUAAa- -3' miRNA: 3'- cGUCCGGaUgUUCUA-------CCGAUGAUUac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 32860 | 0.68 | 0.990733 |
Target: 5'- uGCAGGCUgcuccuUGC-GGcgGGCUACUGc-- -3' miRNA: 3'- -CGUCCGG------AUGuUCuaCCGAUGAUuac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 7382 | 0.68 | 0.989365 |
Target: 5'- uGCAGGCCgugucUGgGAGcAUGGCcugcagACUGGUGc -3' miRNA: 3'- -CGUCCGG-----AUgUUC-UACCGa-----UGAUUAC- -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 87949 | 0.68 | 0.989365 |
Target: 5'- gGUAGGCCUGCAccAGAUGaGUgaggguCUGAa- -3' miRNA: 3'- -CGUCCGGAUGU--UCUAC-CGau----GAUUac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 34437 | 0.68 | 0.987845 |
Target: 5'- gGCuGGCCUGCGGGggGGaugucACUAAg- -3' miRNA: 3'- -CGuCCGGAUGUUCuaCCga---UGAUUac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 61754 | 0.68 | 0.986161 |
Target: 5'- -aGGGCCUGCcAGAUGGCcggguuUACUc--- -3' miRNA: 3'- cgUCCGGAUGuUCUACCG------AUGAuuac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 10366 | 0.69 | 0.977595 |
Target: 5'- aCAGGUCgACcguAGAUGGCUgucauaacGCUGGUGg -3' miRNA: 3'- cGUCCGGaUGu--UCUACCGA--------UGAUUAC- -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 85074 | 0.7 | 0.972077 |
Target: 5'- gGCAGGCUgu---GGUGGCUGCgauaacggAGUGg -3' miRNA: 3'- -CGUCCGGauguuCUACCGAUGa-------UUAC- -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 108745 | 0.72 | 0.92968 |
Target: 5'- aGCuGGCCUGCAGGAaaagcUGGCcgaGCUAc-- -3' miRNA: 3'- -CGuCCGGAUGUUCU-----ACCGa--UGAUuac -5' |
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13353 | 3' | -48.7 | NC_003409.1 | + | 132423 | 1.11 | 0.008069 |
Target: 5'- aGCAGGCCUACAAGAUGGCUACUAAUGu -3' miRNA: 3'- -CGUCCGGAUGUUCUACCGAUGAUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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