Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 9043 | 0.66 | 0.897894 |
Target: 5'- uGCCACCUcUGUCAcggUCuACaGGGGCUUg -3' miRNA: 3'- -CGGUGGAuACGGU---AG-UGgCUCCGAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 110814 | 0.66 | 0.86217 |
Target: 5'- cGUCGCCUAuaccgcaucUGCCAgCACCGcAGGUa-- -3' miRNA: 3'- -CGGUGGAU---------ACGGUaGUGGC-UCCGaga -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 80468 | 0.66 | 0.860626 |
Target: 5'- gGCCACCauuagccaacagGUGCCG-CACCuGAGGUUg- -3' miRNA: 3'- -CGGUGGa-----------UACGGUaGUGG-CUCCGAga -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 110424 | 0.67 | 0.854364 |
Target: 5'- uGCCGCCUAccgaCAUCGCCagaaGAGGCg-- -3' miRNA: 3'- -CGGUGGAUacg-GUAGUGG----CUCCGaga -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 35407 | 0.67 | 0.854364 |
Target: 5'- cCCACCUG-GCCAccUACCGccGGCUCc -3' miRNA: 3'- cGGUGGAUaCGGUa-GUGGCu-CCGAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 35499 | 0.67 | 0.846351 |
Target: 5'- aCCGCCUucUGCCAUgguacguccaACCGAGGC-Cg -3' miRNA: 3'- cGGUGGAu-ACGGUAg---------UGGCUCCGaGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 22146 | 0.67 | 0.829734 |
Target: 5'- aCCGCCccUGCgGUCACgGGGGCg-- -3' miRNA: 3'- cGGUGGauACGgUAGUGgCUCCGaga -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 64633 | 0.67 | 0.829734 |
Target: 5'- gGCCACCUG-GUUuUUGCUGAGGaCUCg -3' miRNA: 3'- -CGGUGGAUaCGGuAGUGGCUCC-GAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 85186 | 0.68 | 0.803444 |
Target: 5'- aGCCACCg--GCCAUCagauauagagaGgCGAcaGGCUCUc -3' miRNA: 3'- -CGGUGGauaCGGUAG-----------UgGCU--CCGAGA- -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 15429 | 0.68 | 0.766206 |
Target: 5'- -gCGCCUuUGUCAUCAU-GGGGCUCg -3' miRNA: 3'- cgGUGGAuACGGUAGUGgCUCCGAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 120688 | 0.69 | 0.73696 |
Target: 5'- cGCuCGCgUAUGCC-UCAUgCGAGGUUCg -3' miRNA: 3'- -CG-GUGgAUACGGuAGUG-GCUCCGAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 14893 | 0.69 | 0.716979 |
Target: 5'- uGCCGCCUGUGgCGUUugCGucGGC-Ca -3' miRNA: 3'- -CGGUGGAUACgGUAGugGCu-CCGaGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 2104 | 0.7 | 0.696699 |
Target: 5'- aGCCACCUAaaauccUGCCAaCAuCCGaAGGUUUUa -3' miRNA: 3'- -CGGUGGAU------ACGGUaGU-GGC-UCCGAGA- -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 133043 | 0.7 | 0.676198 |
Target: 5'- cGCCugCagGUGCCucacCACCGGGGC-Cg -3' miRNA: 3'- -CGGugGa-UACGGua--GUGGCUCCGaGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 64691 | 0.7 | 0.655547 |
Target: 5'- aCCACCUgcuucucaAUGCCAUCaACCGGGucCUCUa -3' miRNA: 3'- cGGUGGA--------UACGGUAG-UGGCUCc-GAGA- -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 115149 | 0.71 | 0.603733 |
Target: 5'- --aAUCUGUGUCAUUaugggguuACCGAGGCUCUc -3' miRNA: 3'- cggUGGAUACGGUAG--------UGGCUCCGAGA- -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 77568 | 0.73 | 0.502547 |
Target: 5'- gGCCACCguggacgcUGUCAUuaugaacaacCGCCGAGGCUCc -3' miRNA: 3'- -CGGUGGau------ACGGUA----------GUGGCUCCGAGa -5' |
|||||||
13353 | 5' | -55.9 | NC_003409.1 | + | 132386 | 1.09 | 0.002481 |
Target: 5'- gGCCACCUAUGCCAUCACCGAGGCUCUc -3' miRNA: 3'- -CGGUGGAUACGGUAGUGGCUCCGAGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home