miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13353 5' -55.9 NC_003409.1 + 9043 0.66 0.897894
Target:  5'- uGCCACCUcUGUCAcggUCuACaGGGGCUUg -3'
miRNA:   3'- -CGGUGGAuACGGU---AG-UGgCUCCGAGa -5'
13353 5' -55.9 NC_003409.1 + 110814 0.66 0.86217
Target:  5'- cGUCGCCUAuaccgcaucUGCCAgCACCGcAGGUa-- -3'
miRNA:   3'- -CGGUGGAU---------ACGGUaGUGGC-UCCGaga -5'
13353 5' -55.9 NC_003409.1 + 80468 0.66 0.860626
Target:  5'- gGCCACCauuagccaacagGUGCCG-CACCuGAGGUUg- -3'
miRNA:   3'- -CGGUGGa-----------UACGGUaGUGG-CUCCGAga -5'
13353 5' -55.9 NC_003409.1 + 110424 0.67 0.854364
Target:  5'- uGCCGCCUAccgaCAUCGCCagaaGAGGCg-- -3'
miRNA:   3'- -CGGUGGAUacg-GUAGUGG----CUCCGaga -5'
13353 5' -55.9 NC_003409.1 + 35407 0.67 0.854364
Target:  5'- cCCACCUG-GCCAccUACCGccGGCUCc -3'
miRNA:   3'- cGGUGGAUaCGGUa-GUGGCu-CCGAGa -5'
13353 5' -55.9 NC_003409.1 + 35499 0.67 0.846351
Target:  5'- aCCGCCUucUGCCAUgguacguccaACCGAGGC-Cg -3'
miRNA:   3'- cGGUGGAu-ACGGUAg---------UGGCUCCGaGa -5'
13353 5' -55.9 NC_003409.1 + 22146 0.67 0.829734
Target:  5'- aCCGCCccUGCgGUCACgGGGGCg-- -3'
miRNA:   3'- cGGUGGauACGgUAGUGgCUCCGaga -5'
13353 5' -55.9 NC_003409.1 + 64633 0.67 0.829734
Target:  5'- gGCCACCUG-GUUuUUGCUGAGGaCUCg -3'
miRNA:   3'- -CGGUGGAUaCGGuAGUGGCUCC-GAGa -5'
13353 5' -55.9 NC_003409.1 + 85186 0.68 0.803444
Target:  5'- aGCCACCg--GCCAUCagauauagagaGgCGAcaGGCUCUc -3'
miRNA:   3'- -CGGUGGauaCGGUAG-----------UgGCU--CCGAGA- -5'
13353 5' -55.9 NC_003409.1 + 15429 0.68 0.766206
Target:  5'- -gCGCCUuUGUCAUCAU-GGGGCUCg -3'
miRNA:   3'- cgGUGGAuACGGUAGUGgCUCCGAGa -5'
13353 5' -55.9 NC_003409.1 + 120688 0.69 0.73696
Target:  5'- cGCuCGCgUAUGCC-UCAUgCGAGGUUCg -3'
miRNA:   3'- -CG-GUGgAUACGGuAGUG-GCUCCGAGa -5'
13353 5' -55.9 NC_003409.1 + 14893 0.69 0.716979
Target:  5'- uGCCGCCUGUGgCGUUugCGucGGC-Ca -3'
miRNA:   3'- -CGGUGGAUACgGUAGugGCu-CCGaGa -5'
13353 5' -55.9 NC_003409.1 + 2104 0.7 0.696699
Target:  5'- aGCCACCUAaaauccUGCCAaCAuCCGaAGGUUUUa -3'
miRNA:   3'- -CGGUGGAU------ACGGUaGU-GGC-UCCGAGA- -5'
13353 5' -55.9 NC_003409.1 + 133043 0.7 0.676198
Target:  5'- cGCCugCagGUGCCucacCACCGGGGC-Cg -3'
miRNA:   3'- -CGGugGa-UACGGua--GUGGCUCCGaGa -5'
13353 5' -55.9 NC_003409.1 + 64691 0.7 0.655547
Target:  5'- aCCACCUgcuucucaAUGCCAUCaACCGGGucCUCUa -3'
miRNA:   3'- cGGUGGA--------UACGGUAG-UGGCUCc-GAGA- -5'
13353 5' -55.9 NC_003409.1 + 115149 0.71 0.603733
Target:  5'- --aAUCUGUGUCAUUaugggguuACCGAGGCUCUc -3'
miRNA:   3'- cggUGGAUACGGUAG--------UGGCUCCGAGA- -5'
13353 5' -55.9 NC_003409.1 + 77568 0.73 0.502547
Target:  5'- gGCCACCguggacgcUGUCAUuaugaacaacCGCCGAGGCUCc -3'
miRNA:   3'- -CGGUGGau------ACGGUA----------GUGGCUCCGAGa -5'
13353 5' -55.9 NC_003409.1 + 132386 1.09 0.002481
Target:  5'- gGCCACCUAUGCCAUCACCGAGGCUCUc -3'
miRNA:   3'- -CGGUGGAUACGGUAGUGGCUCCGAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.