Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13354 | 3' | -54.3 | NC_003409.1 | + | 80739 | 0.67 | 0.896864 |
Target: 5'- --gGGUAG--GGCUUGACUGuGGGAGAa -3' miRNA: 3'- uuaUCAUCugCUGGACUGGC-CCCUCU- -5' |
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13354 | 3' | -54.3 | NC_003409.1 | + | 16106 | 0.69 | 0.813655 |
Target: 5'- ---uGUGGAgGAUCUGGCCGacgcuggggcacgaaGGGAGAc -3' miRNA: 3'- uuauCAUCUgCUGGACUGGC---------------CCCUCU- -5' |
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13354 | 3' | -54.3 | NC_003409.1 | + | 34433 | 0.69 | 0.791795 |
Target: 5'- --cGGUGGcUGGCCUG-CgGGGGGGAu -3' miRNA: 3'- uuaUCAUCuGCUGGACuGgCCCCUCU- -5' |
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13354 | 3' | -54.3 | NC_003409.1 | + | 78725 | 0.7 | 0.772912 |
Target: 5'- --gGGUuGACGAa--GGCCGGGGAGGg -3' miRNA: 3'- uuaUCAuCUGCUggaCUGGCCCCUCU- -5' |
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13354 | 3' | -54.3 | NC_003409.1 | + | 46194 | 0.72 | 0.640849 |
Target: 5'- uGUAGUuauGGCGGCCacgugGGCCGGGGcGAu -3' miRNA: 3'- uUAUCAu--CUGCUGGa----CUGGCCCCuCU- -5' |
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13354 | 3' | -54.3 | NC_003409.1 | + | 132896 | 1.06 | 0.005134 |
Target: 5'- gAAUAGUAGACGACCUGACCGGGGAGAc -3' miRNA: 3'- -UUAUCAUCUGCUGGACUGGCCCCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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