Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13356 | 5' | -51.1 | NC_003409.1 | + | 123521 | 0.66 | 0.988624 |
Target: 5'- aCGCugGGCCGcgagaguacgcuagCCGUUGUccguGUGUUCa -3' miRNA: 3'- -GCGugUCGGCuaa-----------GGCAGCG----UAUAAG- -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 77980 | 0.66 | 0.984063 |
Target: 5'- aGCGCAGCUaggGGUUCgCGUgaaGUGUAUUCc -3' miRNA: 3'- gCGUGUCGG---CUAAG-GCAg--CGUAUAAG- -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 113582 | 0.67 | 0.979876 |
Target: 5'- gGCGCAGgCGAUcgCCGUguugCGCGUGg-- -3' miRNA: 3'- gCGUGUCgGCUAa-GGCA----GCGUAUaag -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 119431 | 0.68 | 0.969133 |
Target: 5'- aGCGCAGCUGAgUCa-UCGCAgccccUAUUCc -3' miRNA: 3'- gCGUGUCGGCUaAGgcAGCGU-----AUAAG- -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 23579 | 0.68 | 0.969133 |
Target: 5'- aGCGCAGCUGAgUCa-UCGCAgccccUAUUCc -3' miRNA: 3'- gCGUGUCGGCUaAGgcAGCGU-----AUAAG- -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 101041 | 0.69 | 0.941519 |
Target: 5'- cCGUuuagGCAGCCGAccuauggagauUUCC-UCGUGUAUUCa -3' miRNA: 3'- -GCG----UGUCGGCU-----------AAGGcAGCGUAUAAG- -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 111865 | 0.7 | 0.901475 |
Target: 5'- gGgGCGGCCGuUUCCGUCGUggAUg- -3' miRNA: 3'- gCgUGUCGGCuAAGGCAGCGuaUAag -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 133438 | 0.71 | 0.887731 |
Target: 5'- gCGCACggggucccagGGCCGGUUCgGUgGCAUAc-- -3' miRNA: 3'- -GCGUG----------UCGGCUAAGgCAgCGUAUaag -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 24964 | 0.71 | 0.865291 |
Target: 5'- aCGUACGGCgGAccgcaUCCGUCGCAa---- -3' miRNA: 3'- -GCGUGUCGgCUa----AGGCAGCGUauaag -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 57223 | 0.72 | 0.840802 |
Target: 5'- aCGC-CAGCUGGUgcUCCuGUCGCAUGg-- -3' miRNA: 3'- -GCGuGUCGGCUA--AGG-CAGCGUAUaag -5' |
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13356 | 5' | -51.1 | NC_003409.1 | + | 133577 | 1.11 | 0.005389 |
Target: 5'- gCGCACAGCCGAUUCCGUCGCAUAUUCg -3' miRNA: 3'- -GCGUGUCGGCUAAGGCAGCGUAUAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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