miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13357 3' -55.6 NC_003409.1 + 116414 0.66 0.896864
Target:  5'- gUGUGAcGUCUgUGaGGGGUGGGCCa-- -3'
miRNA:   3'- -AUACUaUAGGgAC-CCCCGUCUGGacg -5'
13357 3' -55.6 NC_003409.1 + 15046 0.66 0.883052
Target:  5'- aUGUGGUcaucUCCCgcGGGGGCAGGggaCUGa -3'
miRNA:   3'- -AUACUAu---AGGGa-CCCCCGUCUg--GACg -5'
13357 3' -55.6 NC_003409.1 + 47394 0.66 0.882337
Target:  5'- gGUGGaAUCCUuucggcuaaaaaaUGGGGGUAG-CaCUGCu -3'
miRNA:   3'- aUACUaUAGGG-------------ACCCCCGUCuG-GACG- -5'
13357 3' -55.6 NC_003409.1 + 75400 0.66 0.877996
Target:  5'- gGUGAUGuUCCCUaccuuaacuacagacGcaggcacGGGGC-GACCUGCg -3'
miRNA:   3'- aUACUAU-AGGGA---------------C-------CCCCGuCUGGACG- -5'
13357 3' -55.6 NC_003409.1 + 35168 0.67 0.827683
Target:  5'- cUGUGGUGUCCaaggGGaGGGUucugGGGCCgGCu -3'
miRNA:   3'- -AUACUAUAGGga--CC-CCCG----UCUGGaCG- -5'
13357 3' -55.6 NC_003409.1 + 79664 0.67 0.827683
Target:  5'- --gGGUuaCCCUGGGGGCgAGuAUCUGg -3'
miRNA:   3'- auaCUAuaGGGACCCCCG-UC-UGGACg -5'
13357 3' -55.6 NC_003409.1 + 73968 0.67 0.810077
Target:  5'- gGUGGUGUCgaagaGGGGGCAcagguaACCUGCa -3'
miRNA:   3'- aUACUAUAGgga--CCCCCGUc-----UGGACG- -5'
13357 3' -55.6 NC_003409.1 + 88197 0.67 0.810077
Target:  5'- --cGAUGgcgCCUUaGGGGGagcaGGugCUGCa -3'
miRNA:   3'- auaCUAUa--GGGA-CCCCCg---UCugGACG- -5'
13357 3' -55.6 NC_003409.1 + 9620 0.68 0.791795
Target:  5'- ----uUGUUgCUGGGGGUuGugCUGCa -3'
miRNA:   3'- auacuAUAGgGACCCCCGuCugGACG- -5'
13357 3' -55.6 NC_003409.1 + 108575 0.68 0.772912
Target:  5'- -cUGAaAUCCCUGGuacaggaagcGGaGCAGGCCgGCc -3'
miRNA:   3'- auACUaUAGGGACC----------CC-CGUCUGGaCG- -5'
13357 3' -55.6 NC_003409.1 + 101791 0.68 0.772912
Target:  5'- gUAUGucaGUAUCCacauUGGGGGUAGugCaGCu -3'
miRNA:   3'- -AUAC---UAUAGGg---ACCCCCGUCugGaCG- -5'
13357 3' -55.6 NC_003409.1 + 60862 0.69 0.702166
Target:  5'- gUAUGAUAUCCCUaucGaGGGCGGGuccuuucUCUGCu -3'
miRNA:   3'- -AUACUAUAGGGAc--C-CCCGUCU-------GGACG- -5'
13357 3' -55.6 NC_003409.1 + 134476 0.77 0.314922
Target:  5'- --gGGUGUCCCcGGGGGCGGugC-GCc -3'
miRNA:   3'- auaCUAUAGGGaCCCCCGUCugGaCG- -5'
13357 3' -55.6 NC_003409.1 + 133876 1.1 0.002068
Target:  5'- uUAUGAUAUCCCUGGGGGCAGACCUGCu -3'
miRNA:   3'- -AUACUAUAGGGACCCCCGUCUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.