miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13357 5' -52.6 NC_003409.1 + 97312 0.66 0.952406
Target:  5'- gGUGCgAGGCaUCAugcCCGGGGugugccuugccaACGAUUAc -3'
miRNA:   3'- -CACG-UCCGaAGUu--GGCCCC------------UGUUAAU- -5'
13357 5' -52.6 NC_003409.1 + 51113 0.67 0.943428
Target:  5'- cGUGCAGGaaaUAGCCcugGGGGACGGc-- -3'
miRNA:   3'- -CACGUCCgaaGUUGG---CCCCUGUUaau -5'
13357 5' -52.6 NC_003409.1 + 100177 0.67 0.943428
Target:  5'- -cGCGGGUcUCAGguguCUGcGGGACAAUUGu -3'
miRNA:   3'- caCGUCCGaAGUU----GGC-CCCUGUUAAU- -5'
13357 5' -52.6 NC_003409.1 + 112196 0.67 0.933411
Target:  5'- -gGCGucGGCUUaCGACgCGGGGACGu--- -3'
miRNA:   3'- caCGU--CCGAA-GUUG-GCCCCUGUuaau -5'
13357 5' -52.6 NC_003409.1 + 52584 0.67 0.927454
Target:  5'- -aGCAGGCguggCGGCCaaggggcGGGGACGu--- -3'
miRNA:   3'- caCGUCCGaa--GUUGG-------CCCCUGUuaau -5'
13357 5' -52.6 NC_003409.1 + 121961 0.67 0.922343
Target:  5'- gGUGCGGuGCUgcccaggaCGGCCGGaugcGGGCGAUUAc -3'
miRNA:   3'- -CACGUC-CGAa-------GUUGGCC----CCUGUUAAU- -5'
13357 5' -52.6 NC_003409.1 + 133886 0.68 0.910222
Target:  5'- aUGCAGGCUguuaugauaUCc-CUGGGGGCAGa-- -3'
miRNA:   3'- cACGUCCGA---------AGuuGGCCCCUGUUaau -5'
13357 5' -52.6 NC_003409.1 + 133046 0.68 0.90377
Target:  5'- cUGCAGGUgccUCAccACCGGGGcCGGg-- -3'
miRNA:   3'- cACGUCCGa--AGU--UGGCCCCuGUUaau -5'
13357 5' -52.6 NC_003409.1 + 105905 0.68 0.903111
Target:  5'- -cGUGGGCUccuUCAACCGGcccuguuGGACGAUc- -3'
miRNA:   3'- caCGUCCGA---AGUUGGCC-------CCUGUUAau -5'
13357 5' -52.6 NC_003409.1 + 6692 0.69 0.85163
Target:  5'- cUGuCAGGCUUgGGacgcCCGGGGACGGa-- -3'
miRNA:   3'- cAC-GUCCGAAgUU----GGCCCCUGUUaau -5'
13357 5' -52.6 NC_003409.1 + 87612 0.7 0.825867
Target:  5'- cGUGC-GGCggaaucCAACUGGGGGCAGc-- -3'
miRNA:   3'- -CACGuCCGaa----GUUGGCCCCUGUUaau -5'
13357 5' -52.6 NC_003409.1 + 61863 0.71 0.779173
Target:  5'- aUGCAGGCaguccaggUCGACagCGGGGACGGg-- -3'
miRNA:   3'- cACGUCCGa-------AGUUG--GCCCCUGUUaau -5'
13357 5' -52.6 NC_003409.1 + 15757 0.71 0.779173
Target:  5'- gGUGCuGGCUggcugCcuuACCGGGGugGAUa- -3'
miRNA:   3'- -CACGuCCGAa----Gu--UGGCCCCugUUAau -5'
13357 5' -52.6 NC_003409.1 + 133839 1.07 0.0062
Target:  5'- gGUGCAGGCUUCAACCGGGGACAAUUAu -3'
miRNA:   3'- -CACGUCCGAAGUUGGCCCCUGUUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.