miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13358 3' -49.3 NC_003409.1 + 49224 0.66 0.995835
Target:  5'- cGAAUGCAgCAGUagacgcaggCGCCUAUGaCUAGg-- -3'
miRNA:   3'- -CUUGCGU-GUCA---------GUGGAUAC-GAUCaua -5'
13358 3' -49.3 NC_003409.1 + 25106 0.66 0.995103
Target:  5'- ---aGCAC-GUCACC-GUGUUAGUGUc -3'
miRNA:   3'- cuugCGUGuCAGUGGaUACGAUCAUA- -5'
13358 3' -49.3 NC_003409.1 + 109289 0.66 0.99427
Target:  5'- uGACGCACcuuGUCuACCUA-GCUGGg-- -3'
miRNA:   3'- cUUGCGUGu--CAG-UGGAUaCGAUCaua -5'
13358 3' -49.3 NC_003409.1 + 46788 0.67 0.988248
Target:  5'- cGACGUACuggaGGUCugUaGUGCUGGUGg -3'
miRNA:   3'- cUUGCGUG----UCAGugGaUACGAUCAUa -5'
13358 3' -49.3 NC_003409.1 + 132966 0.67 0.986601
Target:  5'- cAGCGCGCcGcgCGCCUGUGCgcGUGc -3'
miRNA:   3'- cUUGCGUGuCa-GUGGAUACGauCAUa -5'
13358 3' -49.3 NC_003409.1 + 23560 0.69 0.9664
Target:  5'- aAugGCGCGGUCGCCUA-GCUcGa-- -3'
miRNA:   3'- cUugCGUGUCAGUGGAUaCGAuCaua -5'
13358 3' -49.3 NC_003409.1 + 119450 0.69 0.9664
Target:  5'- aAugGCGCGGUCGCCUA-GCUcGa-- -3'
miRNA:   3'- cUugCGUGUCAGUGGAUaCGAuCaua -5'
13358 3' -49.3 NC_003409.1 + 134857 1.06 0.013989
Target:  5'- cGAACGCACAGUCACCUAUGCUAGUAUc -3'
miRNA:   3'- -CUUGCGUGUCAGUGGAUACGAUCAUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.