miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13359 3' -58.4 NC_003409.1 + 4149 1.09 0.001374
Target:  5'- aGACGCCAGAUGCCCGCCUUCGUGCACu -3'
miRNA:   3'- -CUGCGGUCUACGGGCGGAAGCACGUG- -5'
13359 3' -58.4 NC_003409.1 + 62880 0.7 0.525277
Target:  5'- gGACGCCGGGgaugGaCgCgGCCUUCGUcauGCACg -3'
miRNA:   3'- -CUGCGGUCUa---C-G-GgCGGAAGCA---CGUG- -5'
13359 3' -58.4 NC_003409.1 + 94757 0.69 0.60584
Target:  5'- uGGCGgCAGuguUGCUCaCCUUgGUGCACa -3'
miRNA:   3'- -CUGCgGUCu--ACGGGcGGAAgCACGUG- -5'
13359 3' -58.4 NC_003409.1 + 20171 0.68 0.657035
Target:  5'- gGGCGUCaaggcggaaacaGGAUGCCCGCUcaUGUGCGu -3'
miRNA:   3'- -CUGCGG------------UCUACGGGCGGaaGCACGUg -5'
13359 3' -58.4 NC_003409.1 + 87462 0.67 0.686564
Target:  5'- --gGCCuucuguAGAUGCCCcgcaagcGCCUUCG-GCACc -3'
miRNA:   3'- cugCGG------UCUACGGG-------CGGAAGCaCGUG- -5'
13359 3' -58.4 NC_003409.1 + 93312 0.66 0.737435
Target:  5'- --aGCCAGGUGCaggGCCcauuacaCGUGCACa -3'
miRNA:   3'- cugCGGUCUACGgg-CGGaa-----GCACGUG- -5'
13359 3' -58.4 NC_003409.1 + 43696 0.66 0.76632
Target:  5'- gGACGCCGGccaccugcUGCCCagagGCCgUgGUGUACg -3'
miRNA:   3'- -CUGCGGUCu-------ACGGG----CGGaAgCACGUG- -5'
13359 3' -58.4 NC_003409.1 + 111997 0.66 0.784995
Target:  5'- -gUGCCGGAUGCaggGCCUggccUCGaagGCACg -3'
miRNA:   3'- cuGCGGUCUACGgg-CGGA----AGCa--CGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.