Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13359 | 5' | -51.9 | NC_003409.1 | + | 122990 | 0.66 | 0.97753 |
Target: 5'- -aGCGCu--GCAGGCUgUGCGcUGUUGg -3' miRNA: 3'- cgUGCGucuCGUCCGGaACGU-AUAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 131076 | 0.66 | 0.969082 |
Target: 5'- cGCugGCGuAGCuGGCCUgGCAg---- -3' miRNA: 3'- -CGugCGUcUCGuCCGGAaCGUauaac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 37074 | 0.66 | 0.976772 |
Target: 5'- aCAUGCAGggucuagccuucuuGGCGGcCCUUGCAUGcUGg -3' miRNA: 3'- cGUGCGUC--------------UCGUCcGGAACGUAUaAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 10131 | 0.66 | 0.97493 |
Target: 5'- gGCugGCAGAGguGGUCaUGgGg---- -3' miRNA: 3'- -CGugCGUCUCguCCGGaACgUauaac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 103465 | 0.68 | 0.941115 |
Target: 5'- uGUAgGCGGGGUAuauuGGCUUUGCGauUGUUGu -3' miRNA: 3'- -CGUgCGUCUCGU----CCGGAACGU--AUAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 57542 | 0.68 | 0.919472 |
Target: 5'- -uGCGCAGcGCAGGCa-UGCuggGUUGg -3' miRNA: 3'- cgUGCGUCuCGUCCGgaACGua-UAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 40554 | 0.68 | 0.9134 |
Target: 5'- gGCGC-CAGuGCAGGCCUaguuUGCGa---- -3' miRNA: 3'- -CGUGcGUCuCGUCCGGA----ACGUauaac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 42167 | 0.68 | 0.941115 |
Target: 5'- gGCACGgAGAGCuGGUCUcgcUGCGc---- -3' miRNA: 3'- -CGUGCgUCUCGuCCGGA---ACGUauaac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 108595 | 0.69 | 0.907066 |
Target: 5'- ---aGCGGAGCAGGCCg-GCcuccUGUUGg -3' miRNA: 3'- cgugCGUCUCGUCCGGaaCGu---AUAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 109457 | 0.69 | 0.886514 |
Target: 5'- cGCACGCGGAgGCGGcGCac-GCAUGUc- -3' miRNA: 3'- -CGUGCGUCU-CGUC-CGgaaCGUAUAac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 105450 | 0.7 | 0.863725 |
Target: 5'- uGCugGCAGAGCuGGGCCg-----GUUGg -3' miRNA: 3'- -CGugCGUCUCG-UCCGGaacguaUAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 30501 | 0.73 | 0.733616 |
Target: 5'- cGCuCGCGGAgGCuggcgAGGCCUgaagGCGUAUUGu -3' miRNA: 3'- -CGuGCGUCU-CG-----UCCGGAa---CGUAUAAC- -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 52156 | 0.74 | 0.638095 |
Target: 5'- cGCACG-GGGGguGGCCUgugGCGUGUg- -3' miRNA: 3'- -CGUGCgUCUCguCCGGAa--CGUAUAac -5' |
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13359 | 5' | -51.9 | NC_003409.1 | + | 4185 | 1.12 | 0.003462 |
Target: 5'- gGCACGCAGAGCAGGCCUUGCAUAUUGg -3' miRNA: 3'- -CGUGCGUCUCGUCCGGAACGUAUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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