miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13359 5' -51.9 NC_003409.1 + 37074 0.66 0.976772
Target:  5'- aCAUGCAGggucuagccuucuuGGCGGcCCUUGCAUGcUGg -3'
miRNA:   3'- cGUGCGUC--------------UCGUCcGGAACGUAUaAC- -5'
13359 5' -51.9 NC_003409.1 + 131076 0.66 0.969082
Target:  5'- cGCugGCGuAGCuGGCCUgGCAg---- -3'
miRNA:   3'- -CGugCGUcUCGuCCGGAaCGUauaac -5'
13359 5' -51.9 NC_003409.1 + 40554 0.68 0.9134
Target:  5'- gGCGC-CAGuGCAGGCCUaguuUGCGa---- -3'
miRNA:   3'- -CGUGcGUCuCGUCCGGA----ACGUauaac -5'
13359 5' -51.9 NC_003409.1 + 108595 0.69 0.907066
Target:  5'- ---aGCGGAGCAGGCCg-GCcuccUGUUGg -3'
miRNA:   3'- cgugCGUCUCGUCCGGaaCGu---AUAAC- -5'
13359 5' -51.9 NC_003409.1 + 109457 0.69 0.886514
Target:  5'- cGCACGCGGAgGCGGcGCac-GCAUGUc- -3'
miRNA:   3'- -CGUGCGUCU-CGUC-CGgaaCGUAUAac -5'
13359 5' -51.9 NC_003409.1 + 105450 0.7 0.863725
Target:  5'- uGCugGCAGAGCuGGGCCg-----GUUGg -3'
miRNA:   3'- -CGugCGUCUCG-UCCGGaacguaUAAC- -5'
13359 5' -51.9 NC_003409.1 + 30501 0.73 0.733616
Target:  5'- cGCuCGCGGAgGCuggcgAGGCCUgaagGCGUAUUGu -3'
miRNA:   3'- -CGuGCGUCU-CG-----UCCGGAa---CGUAUAAC- -5'
13359 5' -51.9 NC_003409.1 + 4185 1.12 0.003462
Target:  5'- gGCACGCAGAGCAGGCCUUGCAUAUUGg -3'
miRNA:   3'- -CGUGCGUCUCGUCCGGAACGUAUAAC- -5'
13359 5' -51.9 NC_003409.1 + 52156 0.74 0.638095
Target:  5'- cGCACG-GGGGguGGCCUgugGCGUGUg- -3'
miRNA:   3'- -CGUGCgUCUCguCCGGAa--CGUAUAac -5'
13359 5' -51.9 NC_003409.1 + 57542 0.68 0.919472
Target:  5'- -uGCGCAGcGCAGGCa-UGCuggGUUGg -3'
miRNA:   3'- cgUGCGUCuCGUCCGgaACGua-UAAC- -5'
13359 5' -51.9 NC_003409.1 + 103465 0.68 0.941115
Target:  5'- uGUAgGCGGGGUAuauuGGCUUUGCGauUGUUGu -3'
miRNA:   3'- -CGUgCGUCUCGU----CCGGAACGU--AUAAC- -5'
13359 5' -51.9 NC_003409.1 + 42167 0.68 0.941115
Target:  5'- gGCACGgAGAGCuGGUCUcgcUGCGc---- -3'
miRNA:   3'- -CGUGCgUCUCGuCCGGA---ACGUauaac -5'
13359 5' -51.9 NC_003409.1 + 10131 0.66 0.97493
Target:  5'- gGCugGCAGAGguGGUCaUGgGg---- -3'
miRNA:   3'- -CGugCGUCUCguCCGGaACgUauaac -5'
13359 5' -51.9 NC_003409.1 + 122990 0.66 0.97753
Target:  5'- -aGCGCu--GCAGGCUgUGCGcUGUUGg -3'
miRNA:   3'- cgUGCGucuCGUCCGGaACGU-AUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.