miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1336 3' -53.2 NC_001335.1 + 19846 0.65 0.819795
Target:  5'- uGGCCGGCcCGAagaugauccacaccUUgGGgaacUGCAGCUCGg -3'
miRNA:   3'- -CCGGUUGuGCU--------------AAgCC----ACGUCGAGUg -5'
1336 3' -53.2 NC_001335.1 + 13016 0.66 0.792563
Target:  5'- aGGCgGauagacaaucgggGCGCGGUgUCGGUcGCucgcGCUCACg -3'
miRNA:   3'- -CCGgU-------------UGUGCUA-AGCCA-CGu---CGAGUG- -5'
1336 3' -53.2 NC_001335.1 + 50738 0.66 0.783507
Target:  5'- aGGcCCAGCgACGAgucgUCGGccggggGCGGCgCACc -3'
miRNA:   3'- -CC-GGUUG-UGCUa---AGCCa-----CGUCGaGUG- -5'
1336 3' -53.2 NC_001335.1 + 13226 0.67 0.762918
Target:  5'- cGGCCAucGCACGGUUCcagGUAGC-CAa -3'
miRNA:   3'- -CCGGU--UGUGCUAAGccaCGUCGaGUg -5'
1336 3' -53.2 NC_001335.1 + 4169 0.67 0.738551
Target:  5'- gGGCCAG-ACGGccUUCGGgccguccccugacgUGUAGCUCAa -3'
miRNA:   3'- -CCGGUUgUGCU--AAGCC--------------ACGUCGAGUg -5'
1336 3' -53.2 NC_001335.1 + 50600 0.67 0.73101
Target:  5'- cGGCCAcgucggGCACGGUUCGGcacaAGCU-ACg -3'
miRNA:   3'- -CCGGU------UGUGCUAAGCCacg-UCGAgUG- -5'
1336 3' -53.2 NC_001335.1 + 8913 0.68 0.698171
Target:  5'- gGGUCGAUcucgGCGugcAUUCGGguggGCGGCUCGa -3'
miRNA:   3'- -CCGGUUG----UGC---UAAGCCa---CGUCGAGUg -5'
1336 3' -53.2 NC_001335.1 + 14297 0.68 0.687075
Target:  5'- cGGUCGGCuACGuguacgUCGGUGCuGCagGCa -3'
miRNA:   3'- -CCGGUUG-UGCua----AGCCACGuCGagUG- -5'
1336 3' -53.2 NC_001335.1 + 23048 0.68 0.675923
Target:  5'- cGCCGGCACGGccaaCGGUGCugagaAGUUCGa -3'
miRNA:   3'- cCGGUUGUGCUaa--GCCACG-----UCGAGUg -5'
1336 3' -53.2 NC_001335.1 + 8802 0.68 0.664728
Target:  5'- cGGCCGugAacguaaGcgUCGGUGUAGCcCAg -3'
miRNA:   3'- -CCGGUugUg-----CuaAGCCACGUCGaGUg -5'
1336 3' -53.2 NC_001335.1 + 47059 0.68 0.664728
Target:  5'- cGCUu--GCGGUUaCGGUGCGGCUgCGCc -3'
miRNA:   3'- cCGGuugUGCUAA-GCCACGUCGA-GUG- -5'
1336 3' -53.2 NC_001335.1 + 24113 0.69 0.642254
Target:  5'- aGGUCuccGCACaGAgcggCGGUGCuggcGCUCGCg -3'
miRNA:   3'- -CCGGu--UGUG-CUaa--GCCACGu---CGAGUG- -5'
1336 3' -53.2 NC_001335.1 + 42338 0.7 0.549478
Target:  5'- cGGCCGaccgGCGCGAgcCGcGUGCgucucggcguccaaGGCUCGCu -3'
miRNA:   3'- -CCGGU----UGUGCUaaGC-CACG--------------UCGAGUG- -5'
1336 3' -53.2 NC_001335.1 + 32084 0.7 0.541799
Target:  5'- aGGCCAGCAgG--UCGGUGCugaccgagcuggAGCgUCACc -3'
miRNA:   3'- -CCGGUUGUgCuaAGCCACG------------UCG-AGUG- -5'
1336 3' -53.2 NC_001335.1 + 24419 0.71 0.530894
Target:  5'- cGGCCGAC-CGAUcUUGGcGUAGC-CACg -3'
miRNA:   3'- -CCGGUUGuGCUA-AGCCaCGUCGaGUG- -5'
1336 3' -53.2 NC_001335.1 + 39635 0.71 0.530894
Target:  5'- uGCCGuaGCGuucccaguCGGcUCGGUGCAGCUCGg -3'
miRNA:   3'- cCGGU--UGU--------GCUaAGCCACGUCGAGUg -5'
1336 3' -53.2 NC_001335.1 + 34377 0.71 0.520069
Target:  5'- uGGCCccuUGCGGc-CGGaUGCGGCUCACg -3'
miRNA:   3'- -CCGGuu-GUGCUaaGCC-ACGUCGAGUG- -5'
1336 3' -53.2 NC_001335.1 + 33895 0.71 0.495514
Target:  5'- cGCC-GCAUGggUUGGUGCagaccacccgguugGGCUCACg -3'
miRNA:   3'- cCGGuUGUGCuaAGCCACG--------------UCGAGUG- -5'
1336 3' -53.2 NC_001335.1 + 32684 0.71 0.477708
Target:  5'- cGGCCAACgGCGGcggCGGUggccagcaGCAGuCUCGCg -3'
miRNA:   3'- -CCGGUUG-UGCUaa-GCCA--------CGUC-GAGUG- -5'
1336 3' -53.2 NC_001335.1 + 17165 0.73 0.3893
Target:  5'- cGGCCAggucgcagGCGCGGUgc--UGCAGCUCGCu -3'
miRNA:   3'- -CCGGU--------UGUGCUAagccACGUCGAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.