Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13360 | 5' | -56.2 | NC_003409.1 | + | 47106 | 0.66 | 0.897823 |
Target: 5'- uGGaGGaGGUUCGCccGGACAGCCUG-Cg-- -3' miRNA: 3'- -CC-CC-CCAGGUG--CCUGUUGGACaGaau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 62635 | 0.66 | 0.889157 |
Target: 5'- uGGGGuGGcccugaaaugaucgUCCACGGACAGCUcGUa--- -3' miRNA: 3'- -CCCC-CC--------------AGGUGCCUGUUGGaCAgaau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 72947 | 0.68 | 0.795264 |
Target: 5'- uGGGGG-CCugGaGGCGACUcGUCUg- -3' miRNA: 3'- cCCCCCaGGugC-CUGUUGGaCAGAau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 45009 | 0.7 | 0.668054 |
Target: 5'- -aGGGGUCgCAUGGAgGACCUaGUCa-- -3' miRNA: 3'- ccCCCCAG-GUGCCUgUUGGA-CAGaau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 108528 | 0.7 | 0.647541 |
Target: 5'- aGGGGGGgaaggCCGCGGugGAauCCUGg---- -3' miRNA: 3'- -CCCCCCa----GGUGCCugUU--GGACagaau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 6397 | 0.74 | 0.439982 |
Target: 5'- cGGGGGUgCCAUGGACGGCCgaggGUgUg- -3' miRNA: 3'- cCCCCCA-GGUGCCUGUUGGa---CAgAau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 10035 | 1.09 | 0.002556 |
Target: 5'- cGGGGGGUCCACGGACAACCUGUCUUAc -3' miRNA: 3'- -CCCCCCAGGUGCCUGUUGGACAGAAU- -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 92981 | 0.72 | 0.575774 |
Target: 5'- aGGaGGGGUCCACGGAgAG--UGUCUc- -3' miRNA: 3'- -CC-CCCCAGGUGCCUgUUggACAGAau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 92807 | 0.72 | 0.575774 |
Target: 5'- aGGaGGGGUCCACGGAgAG--UGUCUc- -3' miRNA: 3'- -CC-CCCCAGGUGCCUgUUggACAGAau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 26939 | 0.66 | 0.869937 |
Target: 5'- aGGGcGGGgcgcgCCGuguuuUGGACAACUUGUCc-- -3' miRNA: 3'- -CCC-CCCa----GGU-----GCCUGUUGGACAGaau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 42174 | 0.66 | 0.891192 |
Target: 5'- uGGGGGUggCACGGAgAGCUgGUCUc- -3' miRNA: 3'- cCCCCCAg-GUGCCUgUUGGaCAGAau -5' |
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13360 | 5' | -56.2 | NC_003409.1 | + | 111723 | 0.66 | 0.897823 |
Target: 5'- -cGGGGUCCACGG-CGAuguCCUGa---- -3' miRNA: 3'- ccCCCCAGGUGCCuGUU---GGACagaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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