miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13361 3' -53.7 NC_003409.1 + 106407 0.66 0.935584
Target:  5'- uGGGCACGUugguaagguGAUGCUCagcaGUGgcaGCGCu -3'
miRNA:   3'- -UCCGUGCG---------UUACGAGga--UACag-CGUG- -5'
13361 3' -53.7 NC_003409.1 + 57533 0.66 0.92486
Target:  5'- cAGGCAUGCuggGUUggaucuuggCCUGUG-CGCACc -3'
miRNA:   3'- -UCCGUGCGuuaCGA---------GGAUACaGCGUG- -5'
13361 3' -53.7 NC_003409.1 + 129945 0.66 0.92486
Target:  5'- cGGguCGaccacccUGCUCCUGUGUCGaCAg -3'
miRNA:   3'- uCCguGCguu----ACGAGGAUACAGC-GUg -5'
13361 3' -53.7 NC_003409.1 + 15776 0.67 0.913106
Target:  5'- uGGCGCaggagucagaGCAGUGCUCCcGUGcguUUGCAg -3'
miRNA:   3'- uCCGUG----------CGUUACGAGGaUAC---AGCGUg -5'
13361 3' -53.7 NC_003409.1 + 105683 0.67 0.906844
Target:  5'- gAGG-ACGCAAagacGCUCCUGgaaagCGCACu -3'
miRNA:   3'- -UCCgUGCGUUa---CGAGGAUaca--GCGUG- -5'
13361 3' -53.7 NC_003409.1 + 14917 0.67 0.896299
Target:  5'- cAGGCGCGaCGAUGCgucgcgcguugccgCCUGUGgCGUuuGCg -3'
miRNA:   3'- -UCCGUGC-GUUACGa-------------GGAUACaGCG--UG- -5'
13361 3' -53.7 NC_003409.1 + 24736 0.68 0.879296
Target:  5'- gGGGCGCGCcgggGCUCCUGgggUGCu- -3'
miRNA:   3'- -UCCGUGCGuua-CGAGGAUacaGCGug -5'
13361 3' -53.7 NC_003409.1 + 127119 0.69 0.821336
Target:  5'- aGGGCGCGcCGGUGCUCCgucccgaccucaggCGCAUu -3'
miRNA:   3'- -UCCGUGC-GUUACGAGGauaca---------GCGUG- -5'
13361 3' -53.7 NC_003409.1 + 117787 0.71 0.69467
Target:  5'- aGGGCACGCua-GCUUCaGUG-CGCGCc -3'
miRNA:   3'- -UCCGUGCGuuaCGAGGaUACaGCGUG- -5'
13361 3' -53.7 NC_003409.1 + 119812 0.72 0.63121
Target:  5'- uGGGCGcCGCGcgcGUGCUCuCUcaGUCGCGCc -3'
miRNA:   3'- -UCCGU-GCGU---UACGAG-GAuaCAGCGUG- -5'
13361 3' -53.7 NC_003409.1 + 114605 0.73 0.620582
Target:  5'- gAGGCGCggGCAcgGC-CCUgauugacugcggGUGUCGCGCu -3'
miRNA:   3'- -UCCGUG--CGUuaCGaGGA------------UACAGCGUG- -5'
13361 3' -53.7 NC_003409.1 + 11610 1.09 0.003558
Target:  5'- cAGGCACGCAAUGCUCCUAUGUCGCACc -3'
miRNA:   3'- -UCCGUGCGUUACGAGGAUACAGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.