Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13362 | 3' | -54.3 | NC_003409.1 | + | 35360 | 0.66 | 0.906771 |
Target: 5'- gGUUUUgGAGCgGaCUCGGUGGGGCGCg -3' miRNA: 3'- -CAGGAgUUCGaC-GAGCCGUCUUGUGa -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 54872 | 0.67 | 0.871884 |
Target: 5'- aGUCCUCGGGCaggGUuucgggCGGCGGGugaggaaaucGCACUg -3' miRNA: 3'- -CAGGAGUUCGa--CGa-----GCCGUCU----------UGUGA- -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 32857 | 0.69 | 0.795276 |
Target: 5'- -cCCUgCAGGCUGCUCcuugcGGCGGGcUACUg -3' miRNA: 3'- caGGA-GUUCGACGAG-----CCGUCUuGUGA- -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 42825 | 0.7 | 0.756756 |
Target: 5'- cUCUUCAAGagcuuucagcuaUUGCUCGGCaAGGACGCc -3' miRNA: 3'- cAGGAGUUC------------GACGAGCCG-UCUUGUGa -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 11738 | 1.09 | 0.003262 |
Target: 5'- cGUCCUCAAGCUGCUCGGCAGAACACUa -3' miRNA: 3'- -CAGGAGUUCGACGAGCCGUCUUGUGA- -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 37636 | 0.69 | 0.785858 |
Target: 5'- aUCCgcCAAGgUGCcCgGGCAGAGCGCUa -3' miRNA: 3'- cAGGa-GUUCgACGaG-CCGUCUUGUGA- -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 37347 | 0.69 | 0.804537 |
Target: 5'- gGUUCUCccauugauGAGCUGCgUGGCGGAGCGg- -3' miRNA: 3'- -CAGGAG--------UUCGACGaGCCGUCUUGUga -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 64108 | 0.67 | 0.879341 |
Target: 5'- cUCCUCAAcCUGCUCaugaaacuGGCAGAAaACa -3' miRNA: 3'- cAGGAGUUcGACGAG--------CCGUCUUgUGa -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 133095 | 0.67 | 0.885138 |
Target: 5'- gGUCCggaugccgugaAGGCgGCggUGGCAGAGCACUu -3' miRNA: 3'- -CAGGag---------UUCGaCGa-GCCGUCUUGUGA- -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 48191 | 0.67 | 0.892168 |
Target: 5'- aUCCUCAAGCcguUGUgagaauuugagGGCAGGGCACc -3' miRNA: 3'- cAGGAGUUCG---ACGag---------CCGUCUUGUGa -5' |
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13362 | 3' | -54.3 | NC_003409.1 | + | 116497 | 0.66 | 0.913009 |
Target: 5'- gGUCgC-CAAGCUGaugUGGCuGGACACUg -3' miRNA: 3'- -CAG-GaGUUCGACga-GCCGuCUUGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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