miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13362 5' -47.4 NC_003409.1 + 42665 0.66 0.999888
Target:  5'- aCAcGUgGUCUGCGgacuCGUcgUCAGGg -3'
miRNA:   3'- gGU-CA-CAGACGCacuuGCAaaAGUCC- -5'
13362 5' -47.4 NC_003409.1 + 100167 0.66 0.999813
Target:  5'- -aGGUGUCUGCG-GGACaauugUCGGa -3'
miRNA:   3'- ggUCACAGACGCaCUUGcaaa-AGUCc -5'
13362 5' -47.4 NC_003409.1 + 41005 0.67 0.999397
Target:  5'- -gAGUGUCUG-GUGGAaugcuguuCGUUUcUCAGGc -3'
miRNA:   3'- ggUCACAGACgCACUU--------GCAAA-AGUCC- -5'
13362 5' -47.4 NC_003409.1 + 41660 0.67 0.999397
Target:  5'- gCGGUGUCU-CGUGggUgccuaaaaaGUUUgcgCAGGg -3'
miRNA:   3'- gGUCACAGAcGCACuuG---------CAAAa--GUCC- -5'
13362 5' -47.4 NC_003409.1 + 11470 0.67 0.999253
Target:  5'- --uGUGUCUGUGUGcAACGag--UAGGg -3'
miRNA:   3'- gguCACAGACGCAC-UUGCaaaaGUCC- -5'
13362 5' -47.4 NC_003409.1 + 40521 0.67 0.99908
Target:  5'- gCGGUGUCUGCucguUGGACGcggccgUUCGGu -3'
miRNA:   3'- gGUCACAGACGc---ACUUGCaa----AAGUCc -5'
13362 5' -47.4 NC_003409.1 + 62075 0.68 0.998631
Target:  5'- cUCAGUGUCUGguccgGUGAugugACGUgggUUAGGc -3'
miRNA:   3'- -GGUCACAGACg----CACU----UGCAaa-AGUCC- -5'
13362 5' -47.4 NC_003409.1 + 15306 0.68 0.997615
Target:  5'- ----cGUCUGCGUGAACGUcaaguacUUGGGu -3'
miRNA:   3'- ggucaCAGACGCACUUGCAaa-----AGUCC- -5'
13362 5' -47.4 NC_003409.1 + 120816 0.69 0.99535
Target:  5'- aUCGGcgGUCggGC-UGAugGUUUUCGGGc -3'
miRNA:   3'- -GGUCa-CAGa-CGcACUugCAAAAGUCC- -5'
13362 5' -47.4 NC_003409.1 + 133039 0.69 0.99535
Target:  5'- cCUGGUGUUUGCGgUGGugGcagagUCGGGc -3'
miRNA:   3'- -GGUCACAGACGC-ACUugCaaa--AGUCC- -5'
13362 5' -47.4 NC_003409.1 + 93661 0.7 0.993687
Target:  5'- gCGGUGggUUGUGUGGGCGg---CGGGa -3'
miRNA:   3'- gGUCACa-GACGCACUUGCaaaaGUCC- -5'
13362 5' -47.4 NC_003409.1 + 4387 0.7 0.991577
Target:  5'- gCCAGUGUCUGCacUGGAUGgg-UCAu- -3'
miRNA:   3'- -GGUCACAGACGc-ACUUGCaaaAGUcc -5'
13362 5' -47.4 NC_003409.1 + 82615 0.71 0.988946
Target:  5'- gCguG-GUCUGCGccgaGGACGcUUUUCAGGg -3'
miRNA:   3'- -GguCaCAGACGCa---CUUGC-AAAAGUCC- -5'
13362 5' -47.4 NC_003409.1 + 60766 0.72 0.979575
Target:  5'- gCUAGUgGUCUGgGUGuucuGACGUUggggCAGGg -3'
miRNA:   3'- -GGUCA-CAGACgCAC----UUGCAAaa--GUCC- -5'
13362 5' -47.4 NC_003409.1 + 132464 0.74 0.929943
Target:  5'- uCCAGUGcCaGCGUGGAgGgg-UCAGGc -3'
miRNA:   3'- -GGUCACaGaCGCACUUgCaaaAGUCC- -5'
13362 5' -47.4 NC_003409.1 + 54515 0.78 0.819667
Target:  5'- aCAGUGUC-GCGUGAAUG---UCGGGg -3'
miRNA:   3'- gGUCACAGaCGCACUUGCaaaAGUCC- -5'
13362 5' -47.4 NC_003409.1 + 11772 1.13 0.011691
Target:  5'- gCCAGUGUCUGCGUGAACGUUUUCAGGc -3'
miRNA:   3'- -GGUCACAGACGCACUUGCAAAAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.