miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13363 5' -56.8 NC_003409.1 + 5807 0.67 0.80775
Target:  5'- cGGCCGAGGaguacCCCCACguacuggggCCaGUGGGGUu- -3'
miRNA:   3'- -CCGGUUCUa----GGGGUG---------GG-CAUCCCAug -5'
13363 5' -56.8 NC_003409.1 + 51501 0.68 0.761884
Target:  5'- cGCCAGGGUCauCCCGCCgGuUGGuGGUGu -3'
miRNA:   3'- cCGGUUCUAG--GGGUGGgC-AUC-CCAUg -5'
13363 5' -56.8 NC_003409.1 + 49282 0.68 0.761884
Target:  5'- cGCCAcGGUggCCCUGCCUaGUGGGGUGg -3'
miRNA:   3'- cCGGUuCUA--GGGGUGGG-CAUCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 133939 0.68 0.761884
Target:  5'- uGCCcgAGGGUCCCCAgCCCGUGGcuaGGccACa -3'
miRNA:   3'- cCGG--UUCUAGGGGU-GGGCAUC---CCa-UG- -5'
13363 5' -56.8 NC_003409.1 + 133473 0.68 0.75233
Target:  5'- aGGCCGgugAGggCCCCcugugucuguccGCCUGgaaacAGGGUGCu -3'
miRNA:   3'- -CCGGU---UCuaGGGG------------UGGGCa----UCCCAUG- -5'
13363 5' -56.8 NC_003409.1 + 87842 0.68 0.742671
Target:  5'- gGGCCAAuuuGAUCCCCuuucccCCCGUuggacauauacGGGGa-- -3'
miRNA:   3'- -CCGGUU---CUAGGGGu-----GGGCA-----------UCCCaug -5'
13363 5' -56.8 NC_003409.1 + 133534 0.7 0.646363
Target:  5'- aGGCCGagaugcugcaggagcGGGagUCCCCACCC-UGGGGg-- -3'
miRNA:   3'- -CCGGU---------------UCU--AGGGGUGGGcAUCCCaug -5'
13363 5' -56.8 NC_003409.1 + 118310 0.7 0.642275
Target:  5'- aGGCUggGGUgCgCCGCgCCGgguuccUGGGGUGCg -3'
miRNA:   3'- -CCGGuuCUAgG-GGUG-GGC------AUCCCAUG- -5'
13363 5' -56.8 NC_003409.1 + 34018 0.7 0.632051
Target:  5'- uGGCUAAGGcuggauuauuUCCCCACaacaAGGGUACg -3'
miRNA:   3'- -CCGGUUCU----------AGGGGUGggcaUCCCAUG- -5'
13363 5' -56.8 NC_003409.1 + 86762 0.71 0.59123
Target:  5'- aGGUCcAGGUCCCCGCaCgGgcGGcGUACg -3'
miRNA:   3'- -CCGGuUCUAGGGGUG-GgCauCC-CAUG- -5'
13363 5' -56.8 NC_003409.1 + 122774 0.71 0.59123
Target:  5'- aGCUGAGGaacuaCCCCACCCGaguGGGUAUc -3'
miRNA:   3'- cCGGUUCUa----GGGGUGGGCau-CCCAUG- -5'
13363 5' -56.8 NC_003409.1 + 24759 0.78 0.248896
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGgGCg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCaUG- -5'
13363 5' -56.8 NC_003409.1 + 24999 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24969 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24939 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24909 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24849 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24819 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24789 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5'
13363 5' -56.8 NC_003409.1 + 24879 0.8 0.190075
Target:  5'- cGCCGGGAUCCCCcUCCGgggAGGGUGg -3'
miRNA:   3'- cCGGUUCUAGGGGuGGGCa--UCCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.