miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13364 3' -50 NC_003409.1 + 21650 0.66 0.995751
Target:  5'- gGUGGgGUACCAGcUGGACAGAa--GCa -3'
miRNA:   3'- gCGUCgCAUGGUC-AUCUGUUUgacUG- -5'
13364 3' -50 NC_003409.1 + 118689 0.66 0.995751
Target:  5'- gGgGGCGUaACCGuaGGACAAACUG-Cu -3'
miRNA:   3'- gCgUCGCA-UGGUcaUCUGUUUGACuG- -5'
13364 3' -50 NC_003409.1 + 28099 0.66 0.994198
Target:  5'- aGCGGCGUGCacuggaGGU-GACcc-CUGACu -3'
miRNA:   3'- gCGUCGCAUGg-----UCAuCUGuuuGACUG- -5'
13364 3' -50 NC_003409.1 + 33342 0.66 0.993266
Target:  5'- aGCAGC--GCCAGUGGAUcucggaauguAAGCUG-Cu -3'
miRNA:   3'- gCGUCGcaUGGUCAUCUG----------UUUGACuG- -5'
13364 3' -50 NC_003409.1 + 117038 0.66 0.993266
Target:  5'- -uUAGCGUA-CAGUAGACcAGGCUG-Ca -3'
miRNA:   3'- gcGUCGCAUgGUCAUCUG-UUUGACuG- -5'
13364 3' -50 NC_003409.1 + 35654 0.66 0.993266
Target:  5'- gGCAGCauuuuUGCCAGUcGGuuguCAgcGACUGACg -3'
miRNA:   3'- gCGUCGc----AUGGUCA-UCu---GU--UUGACUG- -5'
13364 3' -50 NC_003409.1 + 108489 0.66 0.992217
Target:  5'- uGCAGCG-AgCGGUcGAUGAGCUGuCa -3'
miRNA:   3'- gCGUCGCaUgGUCAuCUGUUUGACuG- -5'
13364 3' -50 NC_003409.1 + 15810 0.67 0.991043
Target:  5'- uGCAGUGUG-CAGUAG-UAAAC-GACa -3'
miRNA:   3'- gCGUCGCAUgGUCAUCuGUUUGaCUG- -5'
13364 3' -50 NC_003409.1 + 69295 0.67 0.991043
Target:  5'- -aCAGUGUAucccCCAcaGGACAAGCUGAUg -3'
miRNA:   3'- gcGUCGCAU----GGUcaUCUGUUUGACUG- -5'
13364 3' -50 NC_003409.1 + 951 0.67 0.988279
Target:  5'- aCGCA----ACCAGUGGAUugguACUGACa -3'
miRNA:   3'- -GCGUcgcaUGGUCAUCUGuu--UGACUG- -5'
13364 3' -50 NC_003409.1 + 116765 0.67 0.986669
Target:  5'- aCGCAGCG-GCCgggugcgacGGUAGACAggUcuaggGGCa -3'
miRNA:   3'- -GCGUCGCaUGG---------UCAUCUGUuuGa----CUG- -5'
13364 3' -50 NC_003409.1 + 40573 0.67 0.984895
Target:  5'- gCGCGGCGcGCCuGUcGACAGGCgaGCg -3'
miRNA:   3'- -GCGUCGCaUGGuCAuCUGUUUGacUG- -5'
13364 3' -50 NC_003409.1 + 57999 0.67 0.984708
Target:  5'- aCGCcGCGUAUCAGcggcuguacgAGGCAcccggaaAGCUGGCa -3'
miRNA:   3'- -GCGuCGCAUGGUCa---------UCUGU-------UUGACUG- -5'
13364 3' -50 NC_003409.1 + 55924 0.68 0.982946
Target:  5'- cCGCcuuGCGUACCAG-AGuccCGAGCUcGGCu -3'
miRNA:   3'- -GCGu--CGCAUGGUCaUCu--GUUUGA-CUG- -5'
13364 3' -50 NC_003409.1 + 40496 0.68 0.982946
Target:  5'- aCGCAaCGUACguGgGGAUcgGCUGGCg -3'
miRNA:   3'- -GCGUcGCAUGguCaUCUGuuUGACUG- -5'
13364 3' -50 NC_003409.1 + 14245 0.68 0.973221
Target:  5'- gCGUGGCGguggACCuGUAcuucGACAAGCUGGu -3'
miRNA:   3'- -GCGUCGCa---UGGuCAU----CUGUUUGACUg -5'
13364 3' -50 NC_003409.1 + 103432 0.69 0.956097
Target:  5'- gGCGGCGUuuGCaCGGUuGACaAAAUUGGCa -3'
miRNA:   3'- gCGUCGCA--UG-GUCAuCUG-UUUGACUG- -5'
13364 3' -50 NC_003409.1 + 94402 0.7 0.947528
Target:  5'- gGguGUGUGCCAGUAGuucAACUG-Ca -3'
miRNA:   3'- gCguCGCAUGGUCAUCuguUUGACuG- -5'
13364 3' -50 NC_003409.1 + 110730 0.7 0.942855
Target:  5'- gGCGGCG-ACCucGUGGAUuu-CUGACa -3'
miRNA:   3'- gCGUCGCaUGGu-CAUCUGuuuGACUG- -5'
13364 3' -50 NC_003409.1 + 110275 0.7 0.942855
Target:  5'- uGCGGCG-GCCAGggAGGCGAA-UGGCu -3'
miRNA:   3'- gCGUCGCaUGGUCa-UCUGUUUgACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.