miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 3' -55.3 NC_003409.1 + 87020 0.66 0.927573
Target:  5'- --cGGGa-GUGUGUgUGCCcggGUAGUGGCg -3'
miRNA:   3'- guaCCCagUACGCA-GCGG---CAUCACCG- -5'
13365 3' -55.3 NC_003409.1 + 123424 0.66 0.916412
Target:  5'- --cGGGUUAUugGCaGUUGCCauauagAGUGGCg -3'
miRNA:   3'- guaCCCAGUA--CG-CAGCGGca----UCACCG- -5'
13365 3' -55.3 NC_003409.1 + 133292 0.66 0.910467
Target:  5'- gAUGGaG-CAgacugccaggGCGUUGCCaggaGUGGUGGCg -3'
miRNA:   3'- gUACC-CaGUa---------CGCAGCGG----CAUCACCG- -5'
13365 3' -55.3 NC_003409.1 + 114077 0.66 0.910467
Target:  5'- -cUGGGaCAcgGCGUCGCU-UGGUcGGCa -3'
miRNA:   3'- guACCCaGUa-CGCAGCGGcAUCA-CCG- -5'
13365 3' -55.3 NC_003409.1 + 40505 0.66 0.906785
Target:  5'- aCGUGGGgaUCGgcuggcgGUGUCugcucguuggacgcgGCCGUucGGUGGCg -3'
miRNA:   3'- -GUACCC--AGUa------CGCAG---------------CGGCA--UCACCG- -5'
13365 3' -55.3 NC_003409.1 + 76688 0.67 0.877191
Target:  5'- -uUGGGgguUGgGUUGUggCGUGGUGGCu -3'
miRNA:   3'- guACCCaguACgCAGCG--GCAUCACCG- -5'
13365 3' -55.3 NC_003409.1 + 21395 0.67 0.86985
Target:  5'- gCAUGGGUUuggGCGUCaCCGUGGg--- -3'
miRNA:   3'- -GUACCCAGua-CGCAGcGGCAUCaccg -5'
13365 3' -55.3 NC_003409.1 + 28738 0.69 0.785613
Target:  5'- uGUGGGUUgauUGCGUCGCUuu--UGGCa -3'
miRNA:   3'- gUACCCAGu--ACGCAGCGGcaucACCG- -5'
13365 3' -55.3 NC_003409.1 + 87166 0.71 0.687465
Target:  5'- gGUGGGUgGUGCGcCGgCGgagggcGUGGCc -3'
miRNA:   3'- gUACCCAgUACGCaGCgGCau----CACCG- -5'
13365 3' -55.3 NC_003409.1 + 16125 0.71 0.687465
Target:  5'- gCAUcGGUCucUGCGaacaUCGCCGUGGgagGGCu -3'
miRNA:   3'- -GUAcCCAGu-ACGC----AGCGGCAUCa--CCG- -5'
13365 3' -55.3 NC_003409.1 + 57085 0.71 0.656683
Target:  5'- aCAUGGGUUcgGgG-CGuCCGUcucuGGUGGCu -3'
miRNA:   3'- -GUACCCAGuaCgCaGC-GGCA----UCACCG- -5'
13365 3' -55.3 NC_003409.1 + 14907 0.72 0.636046
Target:  5'- gAUGcGUCGcGCGUUGCCGccuGUGGCg -3'
miRNA:   3'- gUACcCAGUaCGCAGCGGCau-CACCG- -5'
13365 3' -55.3 NC_003409.1 + 31426 0.72 0.615397
Target:  5'- gUAUGGGUUcuuguaaGCGUaGCCGUauGGUGGCg -3'
miRNA:   3'- -GUACCCAGua-----CGCAgCGGCA--UCACCG- -5'
13365 3' -55.3 NC_003409.1 + 20191 0.72 0.593772
Target:  5'- aCGUGGaGUgc-GCGUCagcugcaGCCGUAGUGGCu -3'
miRNA:   3'- -GUACC-CAguaCGCAG-------CGGCAUCACCG- -5'
13365 3' -55.3 NC_003409.1 + 37316 0.75 0.450971
Target:  5'- --cGGGUUAUuGuCGUCGCCGUugucggcaacgcgccAGUGGCu -3'
miRNA:   3'- guaCCCAGUA-C-GCAGCGGCA---------------UCACCG- -5'
13365 3' -55.3 NC_003409.1 + 14708 1.11 0.002415
Target:  5'- cCAUGGGUCAUGCGUCGCCGUAGUGGCc -3'
miRNA:   3'- -GUACCCAGUACGCAGCGGCAUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.