miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13366 3' -61.5 NC_003409.1 + 86062 0.66 0.712649
Target:  5'- aUGCCGGGGaUGCgCCgaaaaaUACCGUCcCGCa -3'
miRNA:   3'- gGCGGCUCC-GUGgGG------AUGGCAGcGCG- -5'
13366 3' -61.5 NC_003409.1 + 125681 0.66 0.702143
Target:  5'- cCUGCaGGGGCuccugcugcugugGCUCCUGCUGUUGUGg -3'
miRNA:   3'- -GGCGgCUCCG-------------UGGGGAUGGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 43694 0.66 0.693498
Target:  5'- aCGCCGGccaccuGCugCCCagagGCCGUgGUGUa -3'
miRNA:   3'- gGCGGCUc-----CGugGGGa---UGGCAgCGCG- -5'
13366 3' -61.5 NC_003409.1 + 14921 0.66 0.693498
Target:  5'- aCGCC-AGGCGCgaCgaugCGUCGCGCg -3'
miRNA:   3'- gGCGGcUCCGUGggGaug-GCAGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 24760 0.66 0.693498
Target:  5'- gCGCCG-GGaucCCCCU-CCGgggagggggCGCGCc -3'
miRNA:   3'- gGCGGCuCCgu-GGGGAuGGCa--------GCGCG- -5'
13366 3' -61.5 NC_003409.1 + 128798 0.66 0.683848
Target:  5'- gUGacuaGAuGGaCACCCCgugaACCGUCGUGCu -3'
miRNA:   3'- gGCgg--CU-CC-GUGGGGa---UGGCAGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 125384 0.66 0.683848
Target:  5'- gCUGCUGuGGCuCCCgCUGCUGUgGCu- -3'
miRNA:   3'- -GGCGGCuCCGuGGG-GAUGGCAgCGcg -5'
13366 3' -61.5 NC_003409.1 + 125444 0.66 0.683848
Target:  5'- gCUGCUGuGGCuCCCgCUGCUGUgGCu- -3'
miRNA:   3'- -GGCGGCuCCGuGGG-GAUGGCAgCGcg -5'
13366 3' -61.5 NC_003409.1 + 125414 0.66 0.683848
Target:  5'- gCUGCUGuGGCuCCCgCUGCUGUgGCu- -3'
miRNA:   3'- -GGCGGCuCCGuGGG-GAUGGCAgCGcg -5'
13366 3' -61.5 NC_003409.1 + 79599 0.66 0.67513
Target:  5'- aCGuuGGGGC-CCCCguaaggacgucggcgAUCGUCucgGCGCu -3'
miRNA:   3'- gGCggCUCCGuGGGGa--------------UGGCAG---CGCG- -5'
13366 3' -61.5 NC_003409.1 + 117526 0.66 0.67416
Target:  5'- uUGCUgGAGGC-CaaCUuCCGUCGCGCu -3'
miRNA:   3'- gGCGG-CUCCGuGggGAuGGCAGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 119803 0.66 0.67416
Target:  5'- gCGCCGgcguGGGCGCCgCgcgcgUGCUcucucaGUCGCGCc -3'
miRNA:   3'- gGCGGC----UCCGUGGgG-----AUGG------CAGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 24038 0.66 0.67416
Target:  5'- -gGCCGGgaggauGGgGCCCCgcccACCGcuggCGCGCc -3'
miRNA:   3'- ggCGGCU------CCgUGGGGa---UGGCa---GCGCG- -5'
13366 3' -61.5 NC_003409.1 + 73775 0.66 0.673189
Target:  5'- aCGCUGAcauuacaGGCAacuCCCCU-CCGguacccCGCGCu -3'
miRNA:   3'- gGCGGCU-------CCGU---GGGGAuGGCa-----GCGCG- -5'
13366 3' -61.5 NC_003409.1 + 40423 0.66 0.66444
Target:  5'- aCGCgGcuAGGCACCCggaaCUAUCGUUGCu- -3'
miRNA:   3'- gGCGgC--UCCGUGGG----GAUGGCAGCGcg -5'
13366 3' -61.5 NC_003409.1 + 114619 0.66 0.658596
Target:  5'- aCGCCGuauucuccgaggcgcGGGCACggCCCUgauugacugcgGgUGUCGCGCu -3'
miRNA:   3'- gGCGGC---------------UCCGUG--GGGA-----------UgGCAGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 73327 0.66 0.654697
Target:  5'- cCCGCCGuuauucuGaGCGCCCCUGCCcugaGC-Ca -3'
miRNA:   3'- -GGCGGCu------C-CGUGGGGAUGGcag-CGcG- -5'
13366 3' -61.5 NC_003409.1 + 26527 0.67 0.635167
Target:  5'- cCCGCCGuc-CG-CCCUACUGUCGCu- -3'
miRNA:   3'- -GGCGGCuccGUgGGGAUGGCAGCGcg -5'
13366 3' -61.5 NC_003409.1 + 76749 0.67 0.625396
Target:  5'- uUGUCGAGGCuCCUCU-UCGUCGCc- -3'
miRNA:   3'- gGCGGCUCCGuGGGGAuGGCAGCGcg -5'
13366 3' -61.5 NC_003409.1 + 60764 0.67 0.615629
Target:  5'- aCCaGUCGAGGCauauACUCCUGCCaGUCGaacgagGCc -3'
miRNA:   3'- -GG-CGGCUCCG----UGGGGAUGG-CAGCg-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.